Codexis, Inc.

United States of America

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C12N 9/02 - Oxidoreductases (1.), e.g. luciferase 147
C12N 9/04 - Oxidoreductases (1.), e.g. luciferase acting on CHOH groups as donors, e.g. glucose oxidase, lactate dehydrogenase (1.1) 134
C12P 13/00 - Preparation of nitrogen-containing organic compounds 130
C12N 9/10 - Transferases (2.) 125
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01 - Chemical and biological materials for industrial, scientific and agricultural use 19
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1.

ENGINEERED RNASE INHIBITOR VARIANTS

      
Application Number 19142170
Status Pending
Filing Date 2023-12-21
First Publication Date 2026-07-30
Owner Codexis, Inc. (USA)
Inventor
  • Knight, Anders Matthew
  • Ng, Simon

Abstract

The present disclosure relates to engineered RNase inhibitor polypeptides and compositions thereof, as well as polynucleotides encoding the engineered RNase inhibitor polypeptides. The present disclosure also provides methods of using the engineered RNase inhibitor polypeptides or compositions thereof for molecular biological, diagnostic and other purposes.

IPC Classes  ?

  • C07K 14/47 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from animalsPeptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from humans from vertebrates from mammals
  • C12Q 1/6806 - Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay

2.

CARBOXYESTERASE POLYPEPTIDES FOR KINETIC RESOLUTION

      
Application Number 19571984
Status Pending
Filing Date 2026-03-19
First Publication Date 2026-07-09
Owner Codexis, Inc. (USA)
Inventor
  • Voladri, Rama
  • Hurtak, Jessica Anna
  • Sowell-Kantz, Auric Anthony
  • Subramanian, Nandhitha
  • Bermudez, Ericka
  • Entwistle, David
  • Mayo, Melissa Ann
  • Riggins, James Nicholas

Abstract

The present invention provides engineered carboxyesterase enzymes having improved properties as compared to a naturally occurring wild-type carboxyesterase enzymes, as well as polynucleotides encoding the engineered carboxyesterase enzymes, host cells capable of expressing the engineered carboxyesterase enzymes, and methods of using the engineered carboxyesterase enzymes in hydrolysis reactions.

IPC Classes  ?

3.

DNA POLYMERASE VARIANTS

      
Application Number 19127897
Status Pending
Filing Date 2023-11-08
First Publication Date 2026-06-25
Owner Codexis, Inc. (USA)
Inventor
  • Bermudez, Ericka
  • Elgart, David
  • Fell, Jason
  • Li, Michelle
  • Macavoy, Marissa Greene
  • Miller, Mathew G.
  • Mitchell, Vesna
  • Nazor, Jovana
  • Nelson, Kevin S.
  • Walker, Scotty
  • Muerhoff, Anthony S.
  • Cheng, Shouqiang
  • Christensen, David
  • Case, Alicia
  • Marohnic, Christopher
  • Nahrjou, Nazanin

Abstract

The present disclosure relates to engineered DNA polymerase polypeptides and compositions thereof, as well as polynucleotides encoding the engineered DNA polymerase polypeptides. The present disclosure also provides methods of using the engineered DNA polymerase polypeptides or compositions thereof for diagnostic and other purposes.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12Q 1/686 - Polymerase chain reaction [PCR]
  • C12Q 1/6869 - Methods for sequencing

4.

RNA POLYMERASE VARIANTS

      
Application Number US2025055168
Publication Number 2026/107080
Status In Force
Filing Date 2025-11-12
Publication Date 2026-05-21
Owner CODEXIS, INC. (USA)
Inventor
  • Copeland, Rachelle
  • Duran, Aldo
  • Knight, Anders
  • Krishnamoorthy, Kalyan
  • Nguyen, James

Abstract

The present disclosure provides engineered RNA polymerase polypeptides and compositions thereof, as well as polynucleotides encoding the engineered RNA polymerase polypeptides. The present disclosure also provides methods of producing and using the engineered RNA polymerase polypeptides or compositions thereof for producing RNA.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12N 15/52 - Genes encoding for enzymes or proenzymes

5.

USES OF PURINE NUCLEOSIDASE AND AMP PHOSPHORYLASE

      
Application Number US2025054904
Publication Number 2026/102434
Status In Force
Filing Date 2025-11-11
Publication Date 2026-05-15
Owner CODEXIS, INC. (USA)
Inventor
  • Forget, Stephanie, Marie
  • Vroom, Jonathan

Abstract

The present disclosure relates to methods of using purine nucleosidase and/or AMP phosphorylase for increasing product formation in enzymatic reactions that generate reaction product nucleoside-5'-monophosphate (NMP), particularly AMP.

IPC Classes  ?

6.

ENGINEERED ADENYLYL-SULFATE KINASE VARIANTS

      
Application Number US2025050530
Publication Number 2026/080865
Status In Force
Filing Date 2025-10-10
Publication Date 2026-04-16
Owner CODEXIS, INC. (USA)
Inventor
  • Bermudez, Ericka
  • Duran, Aldo
  • Forget, Stephanie, Marie
  • Krawczyk, Mikayla, Jianghongxia
  • Krishnamoorthy, Kalyanaraman
  • Kruse, Nikki, D.
  • Macavoy, Marissa, G.
  • Mayo, Melissa, Ann
  • Mcentee, Michele
  • Petkova, Aksiniya, Lyubenova
  • Porter, Nicholas
  • Vroom, Jonathan

Abstract

The present invention provides engineered adenylyl-sulfate kinase polypeptides capable of adding a phosphate group to the 3' position of the sugar of a natural or modified nucleoside diphosphate, as well as compositions and methods of utilizing these engineered polypeptides.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12P 19/30 - Nucleotides
  • C07K 14/195 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from bacteria
  • C12N 15/63 - Introduction of foreign genetic material using vectorsVectorsUse of hosts thereforRegulation of expression
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli
  • C12N 5/10 - Cells modified by introduction of foreign genetic material, e.g. virus-transformed cells
  • C12N 1/21 - BacteriaCulture media therefor modified by introduction of foreign genetic material

7.

TRANSAMINASE BIOCATALYSTS

      
Application Number 19254921
Status Pending
Filing Date 2025-06-30
First Publication Date 2026-03-19
Owner Codexis, Inc. (USA)
Inventor
  • Saville, Christopher K.
  • Mundorff, Emily
  • Moore, Jeffrey C.
  • Devine, Paul N.
  • Janey, Jacob M.

Abstract

The present disclosure relates to polypeptides having transaminase activity, polynucleotides encoding the polypeptides, and methods of using the polypeptides.

IPC Classes  ?

  • C12P 17/18 - Preparation of heterocyclic carbon compounds with only O, N, S, Se, or Te as ring hetero atoms containing at least two hetero rings condensed among themselves or condensed with a common carbocyclic ring system, e.g. rifamycin
  • C12N 9/10 - Transferases (2.)
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12N 15/62 - DNA sequences coding for fusion proteins
  • C12P 13/00 - Preparation of nitrogen-containing organic compounds

8.

BIOCATALYSTS AND METHODS FOR SYNTHESIZING DERIVATIVES OF TRYPTAMINE AND TRYPTAMINE ANALOGS

      
Application Number 19278336
Status Pending
Filing Date 2025-07-23
First Publication Date 2026-02-26
Owner Codexis, Inc. (USA)
Inventor
  • Nazor, Jovana
  • Smith, Derek J.
  • Crowe, Michael A.
  • Song, Shiwei
  • Collier, Steven J.

Abstract

The present disclosure provides engineered transaminase polypeptides for the production of amines, polynucleotides encoding the engineered transaminases, host cells capable of expressing the engineered transaminases, and methods of using the engineered transaminases to prepare compounds useful in the production of active pharmaceutical agents.

IPC Classes  ?

9.

ENONE REDUCTASES

      
Application Number 19272475
Status Pending
Filing Date 2025-07-17
First Publication Date 2026-02-12
Owner Codexis, Inc. (USA)
Inventor
  • Savile, Christopher K.
  • Mitchell, Vesna
  • Zhang, Xiyun
  • Huisman, Gjalt

Abstract

The disclosure relates to engineered enone reductase polypeptides having improved properties, polynucleotides encoding the engineered polypeptides, related vectors, host cells, and methods for making the engineered enone reductase polypeptides. The disclosure also provides methods of using the engineered enone reductase polypeptides for chemical transformations.

IPC Classes  ?

  • C12N 9/02 - Oxidoreductases (1.), e.g. luciferase
  • C12N 15/00 - Mutation or genetic engineeringDNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purificationUse of hosts therefor
  • C12P 7/24 - Preparation of oxygen-containing organic compounds containing a carbonyl group
  • C12P 7/26 - Ketones
  • C12P 7/52 - Propionic acidButyric acids
  • C12P 7/62 - Carboxylic acid esters
  • C12P 13/00 - Preparation of nitrogen-containing organic compounds

10.

ENGINEERED GALACTOSE OXIDASE VARIANT ENZYMES

      
Application Number 19366048
Status Pending
Filing Date 2025-10-22
First Publication Date 2026-02-12
Owner Codexis, Inc. (USA)
Inventor
  • Micklitsch, Christopher
  • Alvizo, Oscar
  • Nazor, Jovana
  • Maniar, Harvinder Chagger
  • Krawczyk, Mikayla Jianghongxia
  • Borra-Garske, Margie Tabuga
  • Subramanian, Nandhitha
  • Fryszkowska, Anna
  • Marshall, Nicholas M.
  • Rodriguez-Granillo, Agustina
  • Verma, Deeptak
  • Andrews, Dewan

Abstract

The present invention provides engineered galactose oxidase (GOase) enzymes, polypeptides having GOase activity, and polynucleotides encoding these enzymes, as well as vectors and host cells comprising these polynucleotides and polypeptides. Methods for producing GOase enzymes are also provided. The present invention further provides compositions comprising the GOase enzymes and methods of using the engineered GOase enzymes. The present invention finds particular use in the production of pharmaceutical and other compounds.

IPC Classes  ?

  • C12N 9/04 - Oxidoreductases (1.), e.g. luciferase acting on CHOH groups as donors, e.g. glucose oxidase, lactate dehydrogenase (1.1)
  • C12N 9/02 - Oxidoreductases (1.), e.g. luciferase
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12P 21/02 - Preparation of peptides or proteins having a known sequence of two or more amino acids, e.g. glutathione

11.

ENGINEERED SUCROSE PHOSPHORYLASE VARIANT ENZYMES

      
Application Number 19364514
Status Pending
Filing Date 2025-10-21
First Publication Date 2026-02-05
Owner Codexis, Inc. (USA)
Inventor
  • Vroom, Jonathan
  • Sivaramakrishnan, Santhosh
  • Subramanian, Nandhitha

Abstract

The present invention provides engineered sucrose phosphorylase (SP) enzymes, polypeptides having SP activity, and polynucleotides encoding these enzymes, as well as vectors and host cells comprising these polynucleotides and polypeptides. Methods for producing SP enzymes are also provided. The present invention further provides compositions comprising the SP enzymes and methods of using the engineered SP enzymes. The present invention finds particular use in the production of pharmaceutical compounds.

IPC Classes  ?

  • C12N 9/10 - Transferases (2.)
  • C12N 1/20 - BacteriaCulture media therefor
  • C12N 15/72 - Expression systems using regulatory sequences derived from the lac-operon

12.

TRANSAMINASE POLYPEPTIDES

      
Application Number 19352911
Status Pending
Filing Date 2025-10-08
First Publication Date 2026-01-29
Owner Codexis, Inc. (USA)
Inventor
  • Dhawan, Ish K.
  • Miller, Gregory
  • Zhang, Xiyun

Abstract

The present disclosure provides engineered transaminase enzymes having improved properties as compared to a naturally occurring wild-type transaminase enzyme. Also provided are polynucleotides encoding the engineered transaminase enzymes, host cells capable of expressing the engineered transaminase enzymes, and methods of using the engineered transaminase enzymes to synthesize a variety of chiral compounds.

IPC Classes  ?

  • C12N 9/10 - Transferases (2.)
  • C12P 13/00 - Preparation of nitrogen-containing organic compounds
  • C12P 41/00 - Processes using enzymes or microorganisms to separate optical isomers from a racemic mixture

13.

ENGINEERED NITROALDOLASES

      
Application Number 18868597
Status Pending
Filing Date 2023-06-06
First Publication Date 2026-01-22
Owner Codexis, Inc. (USA)
Inventor
  • Alvizo, Oscar
  • Novick, Scott J.
  • Subramanian, Nandhitha
  • Schlama, Thierry

Abstract

The present invention provides engineered nitroaldolase polypeptides useful for the production of the β-nitro alcohols, as well as polynucleotides, compositions, and methods utilizing these engineered polypeptides.

IPC Classes  ?

  • C12N 9/88 - Lyases (4.)
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli
  • C12P 13/00 - Preparation of nitrogen-containing organic compounds
  • C12R 1/19 - Escherichia coli
  • C40B 40/10 - Libraries containing peptides or polypeptides, or derivatives thereof

14.

ENGINEERED PHOSPHOPENTOMUTASE VARIANT ENZYMES

      
Application Number 19328851
Status Pending
Filing Date 2025-09-15
First Publication Date 2026-01-08
Owner Codexis, Inc. (USA)
Inventor
  • Novick, Scott J.
  • Yi, Xiang
  • Dellas, Nikki
  • Alvizo, Oscar
  • Nazor, Jovana
  • Duan, Da
  • Mitchell, Vesna
  • Vroom, Jonathan
  • Sivaramakrishnan, Santhosh
  • Subramanian, Nandhitha
  • Moore, Jeffrey C.
  • Huffman, Mark
  • Rodriguez-Granillo, Agustina
  • Verma, Deeptak
  • Murphy, Grant S.
  • Marshall, Nicholas
  • Russell, Jay
  • Canada, Keith A.

Abstract

The present invention provides engineered phosphopentomutase (PPM) enzymes, polypeptides having PPM activity, and polynucleotides encoding these enzymes, as well as vectors and host cells comprising these polynucleotides and polypeptides. Methods for producing PPM enzymes are also provided. The present invention further provides compositions comprising the PPM enzymes and methods of using the engineered PPM enzymes. The present invention finds particular use in the production of pharmaceutical compounds.

IPC Classes  ?

  • C12N 9/90 - Isomerases (5.)
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12N 15/74 - Vectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora
  • C12N 15/81 - Vectors or expression systems specially adapted for eukaryotic hosts for fungi for yeasts

15.

ENGINEERED 3'O-KINASE VARIANTS

      
Application Number US2025034048
Publication Number 2025/264722
Status In Force
Filing Date 2025-06-17
Publication Date 2025-12-26
Owner CODEXIS, INC. (USA)
Inventor
  • Duran, Aldo
  • Krawczyk, Mikayla, Jianghongxia
  • Krishnamoorthy, Kalyanaraman
  • Kruse, Nikki, D.
  • Mayo, Melissa, Ann
  • Riggins, James, Nicholas

Abstract

The present invention provides engineered 3' O-kinase polypeptides capable of adding a phosphate group to the 3' position of the sugar of a natural or modified nucleoside triphosphate, as well as compositions and methods of utilizing these engineered polypeptides.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12N 9/02 - Oxidoreductases (1.), e.g. luciferase
  • C12P 19/32 - Nucleotides having a condensed ring system containing a six-membered ring having two nitrogen atoms in the same-ring, e.g. purine nucleotides, nicotineamide-adenine dinucleotide
  • C12P 19/34 - Polynucleotides, e.g. nucleic acids, oligoribonucleotides
  • C12P 19/38 - Nucleosides

16.

ENZYMATIC SYNTHESIS OF NTP AND 3'-PHOSPHORYLATED NUCLEOTIDES

      
Application Number US2025034294
Publication Number 2025/264882
Status In Force
Filing Date 2025-06-18
Publication Date 2025-12-26
Owner CODEXIS, INC. (USA)
Inventor
  • Bermudez, Ericka
  • Duran, Aldo
  • Entwistle, David
  • Forget, Stephanie, Marie
  • Knight, Anders, Matthew
  • Krawczyk, Mikayla, Jianghongxia
  • Krishnamoorthy, Kalyanaraman
  • Kruse, Nikki, D.
  • Mayo, Melissa, Ann
  • Mcentee, Michele
  • Ng, Simon
  • Petkova, Aksiniya, Lyubenova
  • Porter, Nicholas
  • Provencher, Philip
  • Shoubber, Amani
  • Teadt, Leann, Quertinmont
  • Vroom, Jonathan
  • Watts, David
  • Wong, Leland, Ken
  • Macavoy, Marissa, Greene

Abstract

The present disclosure provides enzymatic methods for the production of 3'-phosphatenucleoside-5'-triphosphate (NQP). The present disclosure further provides enzymatic methods for the production of nucleotide-5'-triphosphates. In some embodiments, a method of producing a nucleotide triphosphate with a phosphate group at the 3' position of the sugar moiety (NQP), the method comprising at least: contacting a nucleoside diphosphate (NDP) with a nucleoside diphosphate kinase, a 3' -O-kinase, and a phosphate donor under reaction conditions such that a NTP with a phosphate group on the 3' position of the sugar moiety (NQP) is produced.

IPC Classes  ?

17.

ENGINEERED IMINE REDUCTASES AND METHODS FOR THE REDUCTIVE AMINATION OF KETONE AND AMINE COMPOUNDS

      
Application Number 19317976
Status Pending
Filing Date 2025-09-03
First Publication Date 2025-12-25
Owner Codexis, Inc. (USA)
Inventor
  • Chen, Haibin
  • Collier, Steven J.
  • Nazor, Jovana
  • Sukumaran, Joly
  • Smith, Derek
  • Moore, Jeffrey C.
  • Hughes, Gregory
  • Janey, Jacob
  • Huisman, Gjalt W.
  • Novick, Scott J.
  • Agard, Nicholas J.
  • Alvizo, Oscar
  • Cope, Gregory A.
  • Yeo, Wan Lin
  • Minor, Stefanie Ng

Abstract

The present disclosure provides engineered polypeptides having imine reductase activity, polynucleotides encoding the engineered imine reductases, host cells capable of expressing the engineered imine reductases, and methods of using these engineered polypeptides with a range of ketone and amine substrate compounds to prepare secondary and tertiary amine product compounds.

IPC Classes  ?

  • C12P 13/02 - Amides, e.g. chloramphenicol
  • C12N 9/06 - Oxidoreductases (1.), e.g. luciferase acting on nitrogen containing compounds as donors (1.4, 1.5, 1.7)
  • C12P 13/00 - Preparation of nitrogen-containing organic compounds
  • C12P 13/04 - Alpha- or beta-amino acids
  • C12P 13/06 - AlanineLeucineIsoleucineSerineHomoserine
  • C12P 17/10 - Nitrogen as only ring hetero atom
  • C12P 17/12 - Nitrogen as only ring hetero atom containing a six-membered hetero ring
  • C12P 17/16 - Preparation of heterocyclic carbon compounds with only O, N, S, Se, or Te as ring hetero atoms containing two or more hetero rings
  • C12P 17/18 - Preparation of heterocyclic carbon compounds with only O, N, S, Se, or Te as ring hetero atoms containing at least two hetero rings condensed among themselves or condensed with a common carbocyclic ring system, e.g. rifamycin

18.

KETOREDUCTASE POLYPEPTIDES FOR THE REDUCTION OF ACETOPHENONES

      
Application Number 19306129
Status Pending
Filing Date 2025-08-21
First Publication Date 2025-12-04
Owner Codexis, Inc. (USA)
Inventor
  • Liang, Jack
  • Jenne, Stephane J.
  • Mundorff, Emily
  • Ching, Charlene
  • Gruber, John M.
  • Krebber, Anke
  • Huisman, Gjalt W.

Abstract

The present disclosure provides engineered ketoreductase enzymes having improved properties as compared to a naturally occurring wild-type ketoreductase enzyme. Also provided are polynucleotides encoding the engineered ketoreductase enzymes, host cells capable of expressing the engineered ketoreductase enzymes, and methods of using the engineered ketoreductase enzymes to synthesize a variety of chiral compounds.

IPC Classes  ?

  • C12N 9/04 - Oxidoreductases (1.), e.g. luciferase acting on CHOH groups as donors, e.g. glucose oxidase, lactate dehydrogenase (1.1)
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli

19.

LIGATION OF POLYNUCLEOTIDES BY LIGASES AND SCREENING METHODS THEREOF

      
Application Number US2025029185
Publication Number 2025/240509
Status In Force
Filing Date 2025-05-13
Publication Date 2025-11-20
Owner CODEXIS, INC. (USA)
Inventor
  • Bimm, Alexander, Jacob
  • Dorigatti, Jonathan, Dewayne
  • Jenne, Stephan
  • Kadam, Supriya, Vijaykumar
  • Miller, Mathew, G.

Abstract

The present disclosure provides a method of predicting a reaction condition activity profile of a ligase for a ligase substrate by Gaussian Process Regression using activity data obtained for different reaction conditions. Further provided is a method of screening a plurality of ligases for activity on a ligase substrate for identifying ligases active on the ligase substrate.

IPC Classes  ?

  • C12Q 1/25 - Measuring or testing processes involving enzymes, nucleic acids or microorganismsCompositions thereforProcesses of preparing such compositions involving enzymes not classifiable in groups
  • C12N 9/00 - Enzymes, e.g. ligases (6.)ProenzymesCompositions thereofProcesses for preparing, activating, inhibiting, separating, or purifying enzymes
  • G16C 20/10 - Analysis or design of chemical reactions, syntheses or processes
  • G16C 20/30 - Prediction of properties of chemical compounds, compositions or mixtures

20.

PENICILLIN-G ACYLASES

      
Application Number 19276625
Status Pending
Filing Date 2025-07-22
First Publication Date 2025-11-13
Owner Codexis, Inc. (USA)
Inventor
  • Banerjee, Goutami
  • Yang, Jie
  • Zhang, Xiyun
  • Milczek, Erika M.
  • Mayo, Melissa Ann
  • Jenne, Stephan

Abstract

The present disclosure relates to engineered penicillin G acylase (PGA) enzymes having improved properties, polynucleotides encoding such enzymes, compositions including the enzymes, and methods of using the enzymes.

IPC Classes  ?

21.

KETOREDUCTASE POLYPEPTIDES FOR THE PRODUCTION OF (R)-3-HYDROXYTHIOLANE

      
Application Number 19278269
Status Pending
Filing Date 2025-07-23
First Publication Date 2025-11-13
Owner Codexis, Inc. (USA)
Inventor
  • Liang, Jack S.
  • Jenne, Stephan
  • Mundorff, Emily
  • Voladri, Rama
  • Lalonde, James J.
  • Huisman, Gjalt W.

Abstract

The present disclosure provides engineered ketoreductase enzymes having improved properties as compared to a naturally occurring wild-type ketoreductase enzyme. Also provided are polynucleotides encoding the engineered ketoreductase enzymes, host cells capable of expressing the engineered ketoreductase enzymes, and methods of using the engineered ketoreductase enzymes to synthesize chiral compounds.

IPC Classes  ?

  • C12P 17/00 - Preparation of heterocyclic carbon compounds with only O, N, S, Se, or Te as ring hetero atoms
  • C12N 9/04 - Oxidoreductases (1.), e.g. luciferase acting on CHOH groups as donors, e.g. glucose oxidase, lactate dehydrogenase (1.1)
  • C12P 17/16 - Preparation of heterocyclic carbon compounds with only O, N, S, Se, or Te as ring hetero atoms containing two or more hetero rings

22.

ENGINEERED IMINE REDUCTASES AND METHODS FOR THE REDUCTIVE AMINATION OF KETONE AND AMINE COMPOUNDS

      
Application Number 19237906
Status Pending
Filing Date 2025-06-13
First Publication Date 2025-11-13
Owner Codexis, Inc. (USA)
Inventor
  • Alvizo, Oscar
  • Mayo, Melissa Ann
  • Moore, Jeffrey C.

Abstract

The present application provides engineered polypeptides having imine reductase activity, polynucleotides encoding the engineered imine reductases, host cells capable of expressing the engineered imine reductases, and methods of using these engineered polypeptides with a range of ketone and amine substrate compounds to prepare secondary and tertiary amine product compounds.

IPC Classes  ?

  • C12N 9/06 - Oxidoreductases (1.), e.g. luciferase acting on nitrogen containing compounds as donors (1.4, 1.5, 1.7)
  • C07K 14/195 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from bacteria
  • C12P 13/00 - Preparation of nitrogen-containing organic compounds

23.

DNA POLYMERASE VARIANTS

      
Application Number US2025028112
Publication Number 2025/235589
Status In Force
Filing Date 2025-05-07
Publication Date 2025-11-13
Owner CODEXIS, INC. (USA)
Inventor
  • Bakhtina, Marina Mikhailovna
  • Bermudez, Ericka
  • Kruse, Nikki D.
  • Macavoy, Marissa Greene
  • Mitchell, Vesna
  • Nazor, Jovana
  • Christensen, David
  • Marohnic, Christopher C.
  • Muerhoff, Anthony S.
  • Walker, Scotty
  • Woolery, Andrew
  • Zhang, Qingbei

Abstract

The present disclosure relates to engineered DNA polymerase polypeptides and compositions thereof, as well as polynucleotides encoding the engineered DNA polymerase polypeptides. The present disclosure also provides methods of using the engineered DNA polymerase polypeptides or compositions thereof for diagnostic and molecular biological applications.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12N 15/54 - Transferases (2)

24.

ENGINEERED TRANSAMINASE POLYPEPTIDES FOR INDUSTRIAL BIOCATALYSIS

      
Application Number 19272619
Status Pending
Filing Date 2025-07-17
First Publication Date 2025-11-06
Owner Codexis, Inc. (USA)
Inventor
  • Quintanar-Audelo, Martina
  • Eberhard, Ellen
  • Nazor, Jovana
  • Smith, Derek
  • Wang, Cuixia

Abstract

The present disclosure provides engineered transaminase polypeptides useful for the synthesis of chiral amine compounds under industrially relevant conditions. The disclosure also provides polynucleotides encoding the engineered transaminase polypeptides, host cells capable of expressing the engineered transaminases, and methods of using the engineered transaminases for the production of chiral amine compounds.

IPC Classes  ?

  • C12N 9/10 - Transferases (2.)
  • C07D 487/04 - Ortho-condensed systems
  • C12P 13/00 - Preparation of nitrogen-containing organic compounds
  • C12P 17/18 - Preparation of heterocyclic carbon compounds with only O, N, S, Se, or Te as ring hetero atoms containing at least two hetero rings condensed among themselves or condensed with a common carbocyclic ring system, e.g. rifamycin

25.

NOVEL P450-BM3 VARIANTS WITH IMPROVED ACTIVITY

      
Application Number 19249225
Status Pending
Filing Date 2025-06-25
First Publication Date 2025-10-23
Owner Codexis, Inc. (USA)
Inventor
  • Osborne, Robert
  • Mitchell, Vesna
  • Htwe, Khin Yu Naing
  • Zhang, Xiyun
  • Milczek, Erika M.
  • Moore, Jeffrey C.

Abstract

The present invention provides improved P450-BM3 variants with improved activity. In some embodiments. the P450-BM3 variants exhibit improved activity over a wide range of substrates.

IPC Classes  ?

26.

COMPOSITIONS AND METHODS OF REDUCING CONVERSION OF PHOSPHOROTHIOATE BONDS

      
Application Number US2025024806
Publication Number 2025/221814
Status In Force
Filing Date 2025-04-15
Publication Date 2025-10-23
Owner CODEXIS, INC. (USA)
Inventor
  • Gauntlett, Derek, James Clifford
  • Hunter, Mckenzie
  • Hurlburt, Tyler
  • Reeves, Ryan, D.
  • Velzy, Wynne
  • Watts, David
  • Bernt, Sebastien

Abstract

In some embodiments, the present disclosure is directed to compositions and methods of reducing conversion of phosphorothioate bonds during the synthesis and storage of oligonucleotides. In some related embodiments, the present disclosure is directed to compositions and methods of reducing conversion of thio-NTPs. In some embodiments, the methods or compositions of the present disclosure find use in reducing phosphorothioate to phosphodiester impurities in an oligonucleotide or therapeutic oligonucleotide.

IPC Classes  ?

  • A61K 31/7125 - Nucleic acids or oligonucleotides having modified internucleoside linkage, i.e. other than 3'-5' phosphodiesters
  • A61P 39/06 - Free radical scavengers or antioxidants
  • B01D 19/00 - Degasification of liquids

27.

IMMOBILIZED TERMINAL NUCLEOTIDYL TRANSFERASES

      
Application Number US2025024818
Publication Number 2025/221822
Status In Force
Filing Date 2025-04-15
Publication Date 2025-10-23
Owner CODEXIS, INC. (USA)
Inventor
  • Chen, Pei Ju
  • Gauntlett, Derek, James Clifford
  • Hurlburt, Tyler
  • Reeves, Ryan
  • Watts, David

Abstract

The present invention provides methods of preparing immobilized engineered terminal nucleotidyl transferase (TnT) polypeptides, and compositions and methods for using these immobilized enzymes in processes for template-independent oligonucleotide synthesis.

IPC Classes  ?

  • C12N 9/22 - Ribonucleases
  • C12N 15/11 - DNA or RNA fragmentsModified forms thereof
  • C12N 9/10 - Transferases (2.)
  • C07H 3/10 - Anhydrosugars, e.g. epoxides
  • C07C 217/50 - Ethers of hydroxy amines of undetermined structure, e.g. obtained by reactions of epoxides with hydroxy amines
  • C12P 19/34 - Polynucleotides, e.g. nucleic acids, oligoribonucleotides

28.

RECOMBINANT PHOSPHATASES

      
Application Number US2025024919
Publication Number 2025/221860
Status In Force
Filing Date 2025-04-16
Publication Date 2025-10-23
Owner CODEXIS, INC. (USA)
Inventor
  • Bakhtina, Marina
  • Forget, Stephanie
  • Shoubber, Amani
  • Vojcic, Ljubica
  • Vroom, Jonathan
  • Watts, David
  • Kruse, Nikki D.

Abstract

The present disclosure relates to recombinant phosphatases and compositions thereof, as well as polynucleotides encoding the recombinant phosphatases. The present disclosure also provides methods of using the recombinant phosphatases or compositions thereof for molecular biological, diagnostic, and other purposes.

IPC Classes  ?

  • C12N 9/16 - Hydrolases (3.) acting on ester bonds (3.1)
  • C07K 14/195 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from bacteria
  • C07K 14/32 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from bacteria from Bacillus (G)
  • C12N 15/52 - Genes encoding for enzymes or proenzymes

29.

USES OF TYPE II AND TYPE I INORGANIC PYROPHOSPHATASES

      
Application Number US2025024998
Publication Number 2025/221909
Status In Force
Filing Date 2025-04-16
Publication Date 2025-10-23
Owner CODEXIS, INC. (USA)
Inventor
  • Forget, Stephanie, Marie
  • Li, Michelle
  • Shoubber, Amani
  • Vojcic, Ljubica
  • Vroom, Jonathan
  • Watts, David

Abstract

The present disclosure provides uses of type II and variant type I and type II inorganic pyrophosphatases under nonnatural conditions present in industrial applications. In another aspect, the present disclosure describes compositions and methods of using inorganic pyrophosphatases with nucleoside triphosphates and in coupled reactions with a second enzyme.

IPC Classes  ?

  • C12Q 1/68 - Measuring or testing processes involving enzymes, nucleic acids or microorganismsCompositions thereforProcesses of preparing such compositions involving nucleic acids
  • C12N 15/10 - Processes for the isolation, preparation or purification of DNA or RNA
  • C12P 19/34 - Polynucleotides, e.g. nucleic acids, oligoribonucleotides
  • B01J 19/00 - Chemical, physical or physico-chemical processes in generalTheir relevant apparatus
  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)

30.

ENGINEERED TERMINAL NUCLEOTIDYL TRANSFERASE VARIANTS AND USES THEREOF

      
Application Number US2025025040
Publication Number 2025/221943
Status In Force
Filing Date 2025-04-16
Publication Date 2025-10-23
Owner CODEXIS, INC. (USA)
Inventor
  • Forget, Stephanie, Marie
  • Li, Michelle
  • Vroom, Jonathan
  • Wong, Leland, Ken

Abstract

The present disclosure provides engineered terminal nucleotidyl transferase (TnT) polypeptides useful in template-independent polynucleotide synthesis, as well as compositions, methods of utilizing these engineered polypeptides, and polynucleotides encoding the engineered terminal nucleotidyl transferases.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12P 19/34 - Polynucleotides, e.g. nucleic acids, oligoribonucleotides
  • C12Q 1/6806 - Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay

31.

ALKALINE PHOSPHATASE IMMOBILIZATION

      
Application Number US2025024787
Publication Number 2025/221802
Status In Force
Filing Date 2025-04-15
Publication Date 2025-10-23
Owner CODEXIS, INC. (USA)
Inventor
  • Gauntlett, Derek, James Clifford
  • Hurlburt, Tyler
  • Reeves, Ryan
  • Watts, David

Abstract

Alkaline phosphatases immobilized on an epoxide functionalized solid support such as polyacrylate, phenolate, polystyrene, polysaccharide, or silica, are provided herein. Methods of synthesizing the immobilized alkaline phosphatases, utilizing an epoxide quenching reagent to deactivate the unreacted epoxide groups on the solid support, are disclosed. These immobilized alkaline phosphatases may be used in various processes for cleaving a phosphate group.

IPC Classes  ?

  • C12N 11/08 - Enzymes or microbial cells immobilised on or in an organic carrier the carrier being a synthetic polymer
  • A61K 38/46 - Hydrolases (3)
  • C12N 11/10 - Enzymes or microbial cells immobilised on or in an organic carrier the carrier being a carbohydrate
  • C12N 11/14 - Enzymes or microbial cells immobilised on or in an inorganic carrier

32.

RECOMBINANT PRIMASES AND METHODS OF USE

      
Application Number US2025024970
Publication Number 2025/221892
Status In Force
Filing Date 2025-04-16
Publication Date 2025-10-23
Owner CODEXIS, INC. (USA)
Inventor
  • Borra-Garske, Margie
  • Garcia, Ravi
  • Hallows, William Casey
  • Knight, Anders Matthew
  • Kruse, Nikki
  • Vroom, Jonathan

Abstract

The present disclosure relates to recombinant primase polypeptides and compositions thereof, as well as polynucleotides encoding the recombinant primase polypeptides. The present disclosure also provides methods of using the recombinant primase polypeptides or compositions thereof for molecular biological, diagnostic, and other purposes.

IPC Classes  ?

  • C12N 9/10 - Transferases (2.)
  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12P 19/30 - Nucleotides
  • C12P 19/34 - Polynucleotides, e.g. nucleic acids, oligoribonucleotides

33.

RNA LIGASE MEDIATED OLIGONUCLEOTIDE SYNTHESIS

      
Application Number US2025025017
Publication Number 2025/221925
Status In Force
Filing Date 2025-04-16
Publication Date 2025-10-23
Owner CODEXIS, INC. (USA)
Inventor
  • Forget, Stephanie, Marie
  • Knight, Anders, Matthew
  • Kruse, Nikki, D.
  • Porter, Nicholas
  • Shoubber, Amani
  • Vojcic, Ljubica
  • Vroom, Jonathan

Abstract

The present disclosure relates to methods of using single-stranded RNA ligase for synthesis of oligonucleotides, including oligonucleotides containing a conjugate moiety. In some embodiments, the present disclosure further provides recombinant single-stranded RNA ligases, polynucleotides encoding the recombinant single-stranded RNA ligases, and compositions of the single-stranded RNA ligases.

IPC Classes  ?

  • C12N 15/11 - DNA or RNA fragmentsModified forms thereof
  • C12N 9/00 - Enzymes, e.g. ligases (6.)ProenzymesCompositions thereofProcesses for preparing, activating, inhibiting, separating, or purifying enzymes
  • C12N 15/52 - Genes encoding for enzymes or proenzymes

34.

ENGINEERED TERMINAL NUCLEOTIDYL TRANSFERASE VARIANTS

      
Application Number US2025025032
Publication Number 2025/221936
Status In Force
Filing Date 2025-04-16
Publication Date 2025-10-23
Owner CODEXIS, INC. (USA)
Inventor
  • Forget, Stephanie, Marie
  • Li, Michelle
  • Mayo, Melissa, Ann
  • Vroom, Jonathan
  • Wong, Leland, Ken
  • Elgart, David
  • Knight, Anders, Matthew

Abstract

The present invention provides engineered terminal nucleotidyl transferase (TnT) polypeptides useful in template-independent polynucleotide synthesis, as well as compositions, methods of utilizing these engineered polypeptides, and polynucleotides encoding the engineered terminal nucleotidyl transferases.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12N 15/10 - Processes for the isolation, preparation or purification of DNA or RNA
  • C12Q 1/6806 - Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay

35.

ENGINEERED TRANSAMINASE POLYPEPTIDES

      
Application Number 19203721
Status Pending
Filing Date 2025-05-09
First Publication Date 2025-10-16
Owner Codexis, Inc. (USA)
Inventor
  • Novick, Scott J.
  • Dellas, Nikki

Abstract

The present disclosure provides engineered transaminase polypeptides useful for the synthesis of chiral amine compounds under industrially relevant conditions. The disclosure also provides polynucleotides encoding the engineered transaminase polypeptides, host cells capable of expressing the engineered transaminases, and methods of using the engineered transaminases for the production of chiral amine compounds.

IPC Classes  ?

36.

SYSTEMS AND METHODS FOR ENZYMATIC OLIGONUCLEOTIDE SYNTHESIS

      
Application Number US2025024415
Publication Number 2025/217610
Status In Force
Filing Date 2025-04-11
Publication Date 2025-10-16
Owner CODEXIS, INC. (USA)
Inventor
  • Entwistle, David
  • Gauntlett, Derek, James Clifford
  • Miller, Michael
  • Reeves, Ryan, D.
  • Watts, David

Abstract

The present invention provides for methods and systems for template-free synthesis of an oligonucleotide, and methods of using the systems as disclosed herein for template-free synthesis of an oligonucleotide.

IPC Classes  ?

  • C12P 19/34 - Polynucleotides, e.g. nucleic acids, oligoribonucleotides
  • C40B 50/08 - Liquid phase synthesis, i.e. wherein all library building blocks are in liquid phase or in solution during library creationParticular methods of cleavage from the liquid support
  • C07K 1/02 - General processes for the preparation of peptides in solution
  • C07K 1/06 - General processes for the preparation of peptides using protecting groups or activating agents
  • C07K 1/16 - ExtractionSeparationPurification by chromatography
  • C07K 7/00 - Peptides having 5 to 20 amino acids in a fully defined sequenceDerivatives thereof
  • C12Q 2521/501 -
  • C12Q 2521/525 -

37.

ENGINEERED IMINE REDUCTASES AND METHODS FOR THE REDUCTIVE AMINATION OF KETONE AND AMINE COMPOUNDS

      
Application Number 19217210
Status Pending
Filing Date 2025-05-23
First Publication Date 2025-10-02
Owner Codexis, Inc. (USA)
Inventor
  • Agard, Nicholas J.
  • Alvizo, Oscar
  • Mayo, Melissa Ann
  • Minor, Stefanie Ng
  • Riggins, James Nicholas
  • Moore, Jeffrey C.

Abstract

The present application provides engineered polypeptides having imine reductase activity, polynucleotides encoding the engineered imine reductases, host cells capable of expressing the engineered imine reductases, and methods of using these engineered polypeptides with a range of ketone and amine substrate compounds to prepare secondary and tertiary amine product compounds.

IPC Classes  ?

  • C12N 9/06 - Oxidoreductases (1.), e.g. luciferase acting on nitrogen containing compounds as donors (1.4, 1.5, 1.7)
  • C12P 13/00 - Preparation of nitrogen-containing organic compounds
  • C12P 17/10 - Nitrogen as only ring hetero atom

38.

BIOCATALYSTS AND METHODS FOR HYDROXYLATION OF CHEMICAL COMPOUNDS

      
Application Number 19227949
Status Pending
Filing Date 2025-06-04
First Publication Date 2025-09-18
Owner Codexis, Inc. (USA)
Inventor
  • Vroom, Jonathan
  • Ortega Guerra, Alberto
  • Liang, Jack
  • Cope, Gregory A.
  • Dellas, Nikki
  • Prier, Christopher Keltie

Abstract

The present invention provides engineered proline hydroxylase polypeptides for the production of hydroxylated compounds, polynucleotides encoding the engineered proline hydroxylases, host cells capable of expressing the engineered proline hydroxylases, and methods of using the engineered proline hydroxylases to prepare compounds useful in the production of active pharmaceutical agents.

IPC Classes  ?

  • C12N 9/02 - Oxidoreductases (1.), e.g. luciferase
  • C12N 1/20 - BacteriaCulture media therefor
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli
  • C12P 13/24 - ProlineHydroxyprolineHistidine

39.

MAXFI

      
Serial Number 99385366
Status Registered
Filing Date 2025-09-10
Registration Date 2026-02-17
Owner Codexis, Inc. ()
NICE Classes  ? 01 - Chemical and biological materials for industrial, scientific and agricultural use

Goods & Services

Enzymes for scientific and research purposes

40.

ENGINEERED DNA POLYMERASE VARIANTS

      
Application Number 19083377
Status Pending
Filing Date 2025-03-18
First Publication Date 2025-08-07
Owner Codexis, Inc. (USA)
Inventor
  • Miller, Mathew G.
  • Mitchell, Vesna
  • Nazor, Jovana
  • Baskerville, Donald S.
  • Dellas, Nikki
  • Elgart, David
  • Vroom, Jonathan
  • Gomes, Sandy M.
  • Subramanian, Nandhitha
  • Bermudez, Ericka

Abstract

The present invention provides engineered DNA polymerase polypeptides and compositions thereof, as well as polynucleotides encoding the engineered DNA polymerase polypeptides. The invention also provides methods for use of the compositions comprising the engineered DNA polymerase polypeptides for diagnostic and other purposes.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)

41.

ENGINEERED TRANSAMINASE POLYPEPTIDES FOR INDUSTRIAL BIOCATALYSIS

      
Application Number 19183477
Status Pending
Filing Date 2025-04-18
First Publication Date 2025-08-07
Owner Codexis, Inc. (USA)
Inventor
  • Novick, Scott J.
  • Dellas, Nikki
  • Alivizo, Oscar
  • Garcia, Ravi David
  • Ching, Charlene
  • Entwistle, David

Abstract

The present invention provides engineered transaminase polypeptides useful for the synthesis of chiral amine compounds under industrially relevant conditions. The invention also provides polynucleotides encoding the engineered transaminase polypeptides, host cells capable of expressing the engineered transaminases, and methods of using the engineered transaminases for the production of chiral amine compounds.

IPC Classes  ?

42.

BIOCATALYSTS AND METHODS FOR HYDROXYLATION OF CHEMICAL COMPOUNDS

      
Application Number 19172267
Status Pending
Filing Date 2025-04-07
First Publication Date 2025-07-24
Owner Codexis, Inc. (USA)
Inventor
  • Nazor, Jovana
  • Osbome, Robert
  • Liang, Jack
  • Vroom, Jonathan
  • Zhang, Xiyun
  • Entwistle, David
  • Voladri, Rama
  • Garcia, Ravi David
  • Moore, Jeffrey C.
  • Grosser, Shane
  • Kosjek, Birgit
  • Truppo, Matthew

Abstract

The present invention provides engineered proline hydroxylase polypeptides for the production of hydroxylated compounds, polynucleotides encoding the engineered proline hydroxylases, host cells capable of expressing the engineered proline hydroxylases, and methods of using the engineered proline hydroxylases to prepare compounds useful in the production of active pharmaceutical agents.

IPC Classes  ?

  • C12N 9/02 - Oxidoreductases (1.), e.g. luciferase
  • C12P 17/12 - Nitrogen as only ring hetero atom containing a six-membered hetero ring

43.

ECO SYNTHESIS

      
Serial Number 99284356
Status Pending
Filing Date 2025-07-15
Owner Codexis, Inc. (USA)
NICE Classes  ? 01 - Chemical and biological materials for industrial, scientific and agricultural use

Goods & Services

Reagents and enzymes for use in the manufacture of enzymatic catalyzed oligonucleotides for scientific and research use

44.

ENGINEERED RNA LIGASES

      
Document Number 03317072
Status Pending
Filing Date 2025-01-03
Open to Public Date 2025-07-10
Owner CODEXIS, INC. (USA)
Inventor
  • Alvizo, Oscar
  • Elgart, David
  • Garcia, Ravi David
  • Kruse, Nikki D.
  • Miller, Mathew G.
  • Nazor, Jovana
  • Rui, Zhe
  • Srivastava, Arya

Abstract

The present disclosure relates to engineered RNA ligase polypeptides and compositions thereof, as well as polynucleotides encoding the engineered RNA ligase polypeptides. The present disclosure also provides methods of using the engineered RNA ligase polypeptides or compositions thereof for molecular biological, diagnostic, and other purposes.

IPC Classes  ?

  • C12N 9/00 - Enzymes, e.g. ligases (6.)ProenzymesCompositions thereofProcesses for preparing, activating, inhibiting, separating, or purifying enzymes
  • C12N 15/52 - Genes encoding for enzymes or proenzymes

45.

ENGINEERED RNA LIGASES

      
Application Number 19009695
Status Pending
Filing Date 2025-01-03
First Publication Date 2025-07-10
Owner CODEXIS, INC. (USA)
Inventor
  • Alvizo, Oscar
  • Elgart, David
  • Garcia, Ravi David
  • Kruse, Nikki D.
  • Miller, Mathew G.
  • Nazor, Jovana
  • Rui, Zhe
  • Srivastava, Arya

Abstract

The present disclosure relates to engineered RNA ligase polypeptides and compositions thereof, as well as polynucleotides encoding the engineered RNA ligase polypeptides. The present disclosure also provides methods of using the engineered RNA ligase polypeptides or compositions thereof for molecular biological, diagnostic, and other purposes.

IPC Classes  ?

  • C12N 9/00 - Enzymes, e.g. ligases (6.)ProenzymesCompositions thereofProcesses for preparing, activating, inhibiting, separating, or purifying enzymes

46.

ENGINEERED RNA LIGASES

      
Application Number US2025010294
Publication Number 2025/147655
Status In Force
Filing Date 2025-01-03
Publication Date 2025-07-10
Owner CODEXIS, INC. (USA)
Inventor
  • Alvizo, Oscar
  • Elgart, David
  • Garcia, Ravi, David
  • Kruse, Nikki, D.
  • Miller, Mathew, G.
  • Nazor, Jovana
  • Rui, Zhe
  • Srivastava, Arya

Abstract

The present disclosure relates to engineered RNA ligase polypeptides and compositions thereof, as well as polynucleotides encoding the engineered RNA ligase polypeptides. The present disclosure also provides methods of using the engineered RNA ligase polypeptides or compositions thereof for molecular biological, diagnostic, and other purposes.

IPC Classes  ?

  • C12N 9/00 - Enzymes, e.g. ligases (6.)ProenzymesCompositions thereofProcesses for preparing, activating, inhibiting, separating, or purifying enzymes
  • C12N 15/52 - Genes encoding for enzymes or proenzymes

47.

ENGINEERED ACETATE KINASE VARIANT ENZYMES

      
Application Number 19081728
Status Pending
Filing Date 2025-03-17
First Publication Date 2025-07-03
Owner Codexis, Inc. (USA)
Inventor
  • Vroom, Jonathan
  • Ortega Guerra, Alberto
  • Nazor, Jovana
  • Krawczyk, Mikayla Jianghongxia

Abstract

The present invention provides engineered acetate kinase (AcK) enzymes, polypeptides having AcK activity, and polynucleotides encoding these enzymes, as well as vectors and host cells comprising these polynucleotides and polypeptides. Methods for producing AcK enzymes are also provided. The present invention further provides compositions comprising the AcK enzymes and methods of using the engineered AcK enzymes. The present invention finds particular use in the production of pharmaceutical compounds.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12N 15/63 - Introduction of foreign genetic material using vectorsVectorsUse of hosts thereforRegulation of expression

48.

KETOREDUCTASE POLYPEPTIDES AND POLYNUCLEOTIDES

      
Application Number 19079931
Status Pending
Filing Date 2025-03-14
First Publication Date 2025-06-26
Owner Codexis, Inc. (Reunion)
Inventor
  • Moore, Jeffrey C.
  • Liang, Jack
  • Penfield, Jonathan
  • Nazor, Jovana
  • Dellas, Nikki
  • Mitchell, Vesna
  • Duan, Da
  • Farasat, Iman
  • Rodriguez-Granillo, Agustina
  • Murphy, Grant
  • Marshall, Nicholas

Abstract

The present invention provides engineered ketoreductase and phosphite dehydrogenase enzymes having improved properties as compared to a naturally occurring wild-type ketoreductase and phosphite dehydrogenase enzymes, as well as polynucleotides encoding the engineered ketoreductase and phosphite dehydrogenase enzymes, host cells capable of expressing the engineered ketoreductase and phosphite dehydrogenase enzymes, and methods of using the engineered ketoreductase and phosphite dehydrogenase enzymes to synthesize a chiral catalyst used in the synthesis of antiviral compounds, such as nucleoside inhibitors. The present invention further provides methods of using the engineered enzymes to deracemize a chiral alcohol in a one-pot, multi-enzyme system.

IPC Classes  ?

  • C12P 41/00 - Processes using enzymes or microorganisms to separate optical isomers from a racemic mixture
  • C12N 9/02 - Oxidoreductases (1.), e.g. luciferase
  • C12N 9/04 - Oxidoreductases (1.), e.g. luciferase acting on CHOH groups as donors, e.g. glucose oxidase, lactate dehydrogenase (1.1)
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli

49.

BIOCATALYSTS AND METHODS FOR HYDROXYLATION OF CHEMICAL COMPOUNDS

      
Application Number 19054277
Status Pending
Filing Date 2025-02-14
First Publication Date 2025-06-05
Owner Codexis, Inc. (USA)
Inventor
  • Chen, Haibin
  • Bong, Yong Koy
  • Cabirol, Fabien L.
  • Gohel Prafulchandra, Anupam
  • Li, Tao
  • Moore, Jeffrey C.
  • Quintanar-Audelo, Martina
  • Hong, Yang
  • Collier, Steven J.
  • Smith, Derek

Abstract

The present disclosure provides engineered proline hydroxylase polypeptides for the production of hydroxylated compounds, polynucleotides encoding the engineered proline hydroxylases, host cells capable of expressing the engineered proline hydroxylases, and methods of using the engineered proline hydroxylases to prepare compounds useful in the production of active pharmaceutical agents.

IPC Classes  ?

  • C12P 17/12 - Nitrogen as only ring hetero atom containing a six-membered hetero ring
  • C12N 9/02 - Oxidoreductases (1.), e.g. luciferase
  • C12P 13/04 - Alpha- or beta-amino acids
  • C12P 13/24 - ProlineHydroxyprolineHistidine
  • C12P 17/18 - Preparation of heterocyclic carbon compounds with only O, N, S, Se, or Te as ring hetero atoms containing at least two hetero rings condensed among themselves or condensed with a common carbocyclic ring system, e.g. rifamycin

50.

ENGINEERED RNA LIGASES

      
Document Number 03311392
Status Pending
Filing Date 2024-11-21
Open to Public Date 2025-05-30
Owner CODEXIS, INC. (USA)
Inventor
  • Bakhtina, Marina Mikhailovna
  • Elgart, David
  • Kruse, Nikki D.
  • Miller, Mathew G.
  • Nazor, Jovana
  • Novick, Scott J.
  • Shoubber, Amani
  • Vojcic, Ljubica

IPC Classes  ?

  • C12N 9/00 - Enzymes, e.g. ligases (6.)ProenzymesCompositions thereofProcesses for preparing, activating, inhibiting, separating, or purifying enzymes
  • C12N 15/10 - Processes for the isolation, preparation or purification of DNA or RNA
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli
  • C12N 15/74 - Vectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora
  • C12N 15/85 - Vectors or expression systems specially adapted for eukaryotic hosts for animal cells

51.

ENGINEERED RNA LIGASES

      
Application Number US2024056979
Publication Number 2025/111510
Status In Force
Filing Date 2024-11-21
Publication Date 2025-05-30
Owner CODEXIS, INC. (USA)
Inventor
  • Bakhtina, Marina, Mikhailovna
  • Elgart, David
  • Kruse, Nikki, D.
  • Miller, Mathew, G.
  • Nazor, Jovana
  • Novick, Scott, J.
  • Shoubber, Amani
  • Vojcic, Ljubica

Abstract

The present disclosure provides engineered RNA ligases, recombinant polynucleotides encoding the engineered RNA ligases, and compositions of the engineered RNA ligases. The present disclosure further provides uses of the engineered RNA ligases for ligation of polynucleotide substrates.

IPC Classes  ?

  • C12N 9/00 - Enzymes, e.g. ligases (6.)ProenzymesCompositions thereofProcesses for preparing, activating, inhibiting, separating, or purifying enzymes
  • C12N 15/10 - Processes for the isolation, preparation or purification of DNA or RNA
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli
  • C12N 15/74 - Vectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora
  • C12N 15/85 - Vectors or expression systems specially adapted for eukaryotic hosts for animal cells

52.

ENGINEERED RNA LIGASES

      
Application Number 18955904
Status Pending
Filing Date 2024-11-21
First Publication Date 2025-05-22
Owner CODEXIS, INC. (USA)
Inventor
  • Bakhtina, Marina Mikhailovna
  • Elgart, David
  • Kruse, Nikki D.
  • Miller, Mathew G.
  • Nazor, Jovana
  • Novick, Scott J.
  • Shoubber, Amani
  • Vojcic, Ljubica

Abstract

The present disclosure provides engineered RNA ligases, recombinant polynucleotides encoding the engineered RNA ligases, and compositions of the engineered RNA ligases. The present disclosure further provides uses of the engineered RNA ligases for ligation of polynucleotide substrates.

IPC Classes  ?

  • C12N 9/00 - Enzymes, e.g. ligases (6.)ProenzymesCompositions thereofProcesses for preparing, activating, inhibiting, separating, or purifying enzymes
  • C12N 15/11 - DNA or RNA fragmentsModified forms thereof
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli
  • C12P 21/02 - Preparation of peptides or proteins having a known sequence of two or more amino acids, e.g. glutathione

53.

ENGINEERED NUCLEOSIDE DEOXYRIBOSYLTRANSFERASE VARIANT ENZYMES

      
Application Number 18683245
Status Pending
Filing Date 2022-08-10
First Publication Date 2025-05-01
Owner Codexis, Inc. (USA)
Inventor
  • Borra-Garske, Margie Tabuga
  • Alvizo, Oscar
  • Miller, Lillian Jasmine
  • Petkova, Aksiniya Lyubenova
  • Huffman, Mark
  • Rodriguez-Granillo, Agustina

Abstract

The present invention provides engineered nucleoside deoxyribosyltransferase (NDT) enzymes, polypeptides having NDT activity, and polynucleotides encoding these enzymes, as well as vectors and host cells comprising these polynucleotides and polypeptides. Methods for producing NDT enzymes are also provided. The present invention further provides compositions comprising the NDT enzymes and methods of using the engineered NDT enzymes. The present invention finds particular use in the production of pharmaceutical compounds.

IPC Classes  ?

  • C12N 9/10 - Transferases (2.)
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli

54.

ENGINEERED IMINE REDUCTASES AND METHODS FOR THE REDUCTIVE AMINATION OF KETONE AND AMINE COMPOUNDS

      
Application Number 18976769
Status Pending
Filing Date 2024-12-11
First Publication Date 2025-05-01
Owner Codexis, Inc. (USA)
Inventor
  • Yi, Xiang
  • Alvizo, Oscar
  • Garcia, Ravi David
  • Entwistle, David
  • Ching, Charlene
  • Riggins, James Nicholas

Abstract

The present application provides engineered polypeptides having imine reductase activity, polynucleotides encoding the engineered polypeptides, host cells capable of expressing the engineered polypeptides, and methods of using these engineered polypeptides with a range of ketone and amine substrate compounds to prepare secondary and tertiary amine product compounds.

IPC Classes  ?

  • C12P 13/04 - Alpha- or beta-amino acids
  • C12N 9/06 - Oxidoreductases (1.), e.g. luciferase acting on nitrogen containing compounds as donors (1.4, 1.5, 1.7)

55.

ENGINEERED GLUCOSE DEHYDROGENASES AND METHODS FOR THE REDUCTIVE AMINATION OF KETONE AND AMINE COMPOUNDS

      
Application Number 18999352
Status Pending
Filing Date 2024-12-23
First Publication Date 2025-04-24
Owner Codexis, Inc. (USA)
Inventor
  • Yi, Xiang
  • Alvizo, Oscar
  • Garcia, Ravi David
  • Entwistle, David
  • Ching, Charlene
  • Riggins, James Nicholas
  • Subramanian, Nandhitha

Abstract

The present application provides engineered glucose dehydrogenase polypeptides having imine reductase activity, polynucleotides encoding the engineered polypeptides, host cells capable of expressing the engineered polypeptides, and methods of using these engineered polypeptides with a range of ketone and amine substrate compounds to prepare secondary and tertiary amine product compounds.

IPC Classes  ?

  • C12N 9/04 - Oxidoreductases (1.), e.g. luciferase acting on CHOH groups as donors, e.g. glucose oxidase, lactate dehydrogenase (1.1)
  • C12N 1/20 - BacteriaCulture media therefor
  • C12N 15/72 - Expression systems using regulatory sequences derived from the lac-operon

56.

ENGINEERED ADENOSINE KINASE VARIANTS

      
Document Number 03307884
Status Pending
Filing Date 2024-10-11
Open to Public Date 2025-04-17
Owner CODEXIS, INC. (USA)
Inventor
  • Forget, Stephanie Marie
  • Macavoy, Marissa Greene
  • Ng, Simon
  • Porter, Nicholas
  • Teadt, Leann Quertinmont
  • Vroom, Jonathan

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12N 15/63 - Introduction of foreign genetic material using vectorsVectorsUse of hosts thereforRegulation of expression
  • C12P 19/30 - Nucleotides

57.

ENGINEERED ADENYLATE KINASE VARIANTS

      
Application Number 18913751
Status Pending
Filing Date 2024-10-11
First Publication Date 2025-04-17
Owner CODEXIS, INC. (USA)
Inventor
  • Forget, Stephanie Marie
  • Knight, Anders Matthew
  • Macavoy, Marissa Greene
  • Ng, Simon
  • Porter, Nicholas
  • Vroom, Jonathan

Abstract

The present disclosure provides engineered adenylate kinases, and recombinant polynucleotides encoding the engineered adenylate kinases. The present disclosure further provides uses of the engineered adenylate kinases for converting NMP to NDP.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12N 9/08 - Oxidoreductases (1.), e.g. luciferase acting on hydrogen peroxide as acceptor (1.11)
  • C12N 15/11 - DNA or RNA fragmentsModified forms thereof

58.

ENGINEERED ADENOSINE KINASE VARIANTS

      
Application Number 18913982
Status Pending
Filing Date 2024-10-11
First Publication Date 2025-04-17
Owner CODEXIS, INC. (USA)
Inventor
  • Forget, Stephanie Marie
  • Macavoy, Marissa Greene
  • Ng, Simon
  • Porter, Nicholas
  • Teadt, Leann Quertinmont
  • Vroom, Jonathan

Abstract

The present disclosure provides engineered adenosine kinase polypeptides, and recombinant polynucleotides encoding the engineered adenosine kinases. The present disclosure further provides method of using the engineered adenosine kinases.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)

59.

ENGINEERED ADENOSINE KINASE VARIANTS

      
Application Number US2024051139
Publication Number 2025/081113
Status In Force
Filing Date 2024-10-11
Publication Date 2025-04-17
Owner CODEXIS, INC. (USA)
Inventor
  • Forget, Stephanie, Marie
  • Macavoy, Marissa, Greene
  • Ng, Simon
  • Porter, Nicholas
  • Teadt, Leann, Quertinmont
  • Vroom, Jonathan

Abstract

The present disclosure provides engineered adenosine kinase polypeptides, and recombinant polynucleotides encoding the engineered adenosine kinases. The present disclosure further provides method of using the engineered adenosine kinases.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12N 15/63 - Introduction of foreign genetic material using vectorsVectorsUse of hosts thereforRegulation of expression
  • C12P 19/30 - Nucleotides

60.

ENGINEERED ADENYLATE KINASE VARIANTS

      
Document Number 03305540
Status Pending
Filing Date 2024-10-11
Open to Public Date 2025-04-17
Owner CODEXIS, INC. (USA)
Inventor
  • Forget, Stephanie Marie
  • Knight, Anders Matthew
  • Macavoy, Marissa Greene
  • Ng, Simon
  • Porter, Nicholas
  • Vroom, Jonathan

IPC Classes  ?

  • C07H 21/02 - Compounds containing two or more mononucleotide units having separate phosphate or polyphosphate groups linked by saccharide radicals of nucleoside groups, e.g. nucleic acids with ribosyl as saccharide radical
  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12P 19/30 - Nucleotides
  • C12Q 1/22 - Testing for sterility conditions
  • C12Q 1/48 - Measuring or testing processes involving enzymes, nucleic acids or microorganismsCompositions thereforProcesses of preparing such compositions involving transferase

61.

ENGINEERED ACETATE KINASE VARIANTS

      
Document Number 03306174
Status Pending
Filing Date 2024-10-11
Open to Public Date 2025-04-17
Owner CODEXIS, INC. (USA)
Inventor
  • Forget, Stephanie Marie
  • Macavoy, Marissa Greene
  • Ng, Simon
  • Porter, Nicholas
  • Vroom, Jonathan

IPC Classes  ?

  • C07K 14/195 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from bacteria
  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12N 15/63 - Introduction of foreign genetic material using vectorsVectorsUse of hosts thereforRegulation of expression
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli

62.

ENGINEERED ACETATE KINASE VARIANTS

      
Application Number 18913845
Status Pending
Filing Date 2024-10-11
First Publication Date 2025-04-17
Owner CODEXIS, INC. (USA)
Inventor
  • Forget, Stephanie Marie
  • Macavoy, Marissa Greene
  • Ng, Simon
  • Porter, Nicholas
  • Vroom, Jonathan

Abstract

The present disclosure relates to engineered acetate kinase enzymes and compositions thereof, recombinant polynucleotides encoding the engineered acetate kinase enzymes, and method of using the engineered acetate kinase enzymes.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12N 11/00 - Carrier-bound or immobilised enzymesCarrier-bound or immobilised microbial cellsPreparation thereof
  • C12P 19/38 - Nucleosides

63.

ENGINEERED ADENYLATE KINASE VARIANTS

      
Application Number US2024051084
Publication Number 2025/081067
Status In Force
Filing Date 2024-10-11
Publication Date 2025-04-17
Owner CODEXIS, INC. (USA)
Inventor
  • Forget, Stephanie, Marie
  • Knight, Anders, Matthew
  • Macavoy, Marissa, Greene
  • Ng, Simon
  • Porter, Nicholas
  • Vroom, Jonathan

Abstract

The present disclosure provides engineered adenylate kinases, and recombinant polynucleotides encoding the engineered adenylate kinases. The present disclosure further provides uses of the engineered adenylate kinases for converting NMP to NDP.

IPC Classes  ?

  • C12Q 1/48 - Measuring or testing processes involving enzymes, nucleic acids or microorganismsCompositions thereforProcesses of preparing such compositions involving transferase
  • C07H 21/02 - Compounds containing two or more mononucleotide units having separate phosphate or polyphosphate groups linked by saccharide radicals of nucleoside groups, e.g. nucleic acids with ribosyl as saccharide radical
  • C12Q 1/22 - Testing for sterility conditions
  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12P 19/30 - Nucleotides

64.

ENGINEERED ACETATE KINASE VARIANTS

      
Application Number US2024051118
Publication Number 2025/081095
Status In Force
Filing Date 2024-10-11
Publication Date 2025-04-17
Owner CODEXIS, INC. (USA)
Inventor
  • Forget, Stephanie Marie
  • Macavoy, Marissa Greene
  • Ng, Simon
  • Porter, Nicholas
  • Vroom, Jonathan

Abstract

The present disclosure relates to engineered acetate kinase enzymes and compositions thereof, recombinant polynucleotides encoding the engineered acetate kinase enzymes, and method of using the engineered acetate kinase enzymes.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C07K 14/195 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from bacteria
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12N 15/63 - Introduction of foreign genetic material using vectorsVectorsUse of hosts thereforRegulation of expression
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli

65.

BIOCATALYSTS AND METHODS FOR THE SYNTHESIS OF SUBSTITUTED LACTAMS

      
Application Number 18971755
Status Pending
Filing Date 2024-12-06
First Publication Date 2025-03-27
Owner Codexis, Inc. (USA)
Inventor
  • Cabirol, Fabien Louis
  • Chen, Haibin
  • Gohel, Anupam
  • Salim, Paulina Elena
  • Smith, Derek J.
  • Janey, Jacob
  • Kosjek, Birgit
  • Tang, Weng Lin
  • Hsieh, Helen
  • Pham, Son Q.

Abstract

The present disclosure relates to transaminase polypeptides capable of aminating a dicarbonyl substrate, and polynucleotides, vectors, host cells, and methods of making and using the transaminase polypeptides.

IPC Classes  ?

  • C12N 9/10 - Transferases (2.)
  • C07D 211/76 - Oxygen atoms attached in position 2 or 6
  • C12P 13/00 - Preparation of nitrogen-containing organic compounds
  • C12P 17/12 - Nitrogen as only ring hetero atom containing a six-membered hetero ring

66.

ENGINEERED CYCLIC GMP-AMP SYNTHASE (cGAS) VARIANT ENZYMES

      
Application Number 18953518
Status Pending
Filing Date 2024-11-20
First Publication Date 2025-03-13
Owner Codexis, Inc. (USA)
Inventor
  • Borra-Garske, Margie Tabuga
  • Alvizo, Oscar
  • Miller, Lillian Jasmine
  • Petkova, Aksiniya Lyubenova

Abstract

Cyclic GMP-AMP synthase (cGAS) enzymes have been engineered to produce polypeptides having increased cGAS activity in the cyclization of modified nucleoside triphosphates, including thiolated or fluorinated nucleoside triphosphates, and polynucleotides encoding these enzymes, as well as vectors and host cells comprising these polynucleotides and polypeptides. Methods for producing cGAS enzymes, compositions comprising the cGAS enzymes and methods of using the engineered cGAS enzymes are useful for the production of pharmaceutical compounds.

IPC Classes  ?

  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12N 15/63 - Introduction of foreign genetic material using vectorsVectorsUse of hosts thereforRegulation of expression

67.

IGM PROTEASES

      
Application Number US2024044871
Publication Number 2025/050045
Status In Force
Filing Date 2024-08-30
Publication Date 2025-03-06
Owner CODEXIS, INC. (USA)
Inventor
  • Ferrer, Brian
  • Kruse, Nikki, D.
  • Silverman, Adam, P.
  • Windgassen, Tricia

Abstract

The present disclosure relates to proteases that exhibit activity against immunoglobulins, particularly IgM antibodies, and uses of the proteases for analysis of IgM, for generation of IgM antibody fragments, diagnostics related to IgM antibodies, and for treating and/or preventing diseases mediated by IgM antibodies.

IPC Classes  ?

  • C07K 16/12 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from bacteria
  • C07K 14/315 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from bacteria from Streptococcus (G), e.g. Enterococci
  • A61K 39/00 - Medicinal preparations containing antigens or antibodies
  • A61P 35/00 - Antineoplastic agents

68.

PENICILLIN-G ACYLASES

      
Application Number 18612248
Status Pending
Filing Date 2024-03-21
First Publication Date 2025-01-30
Owner Codexis, Inc. (USA)
Inventor
  • Nazor, Jovana
  • Mitchell, Vesna
  • Elgart, David
  • Lexa, Katrina W.
  • Dellas, Nikki
  • Orr, Robert Kevin
  • Alvizo, Oscar
  • Garcia, Ravi David
  • Viduya, Judy Victoria Antonio
  • Moffett, Courtney Dianne

Abstract

The present invention provides engineered penicillin G acylase (PGA) enzymes having improved properties, polynucleotides encoding such enzymes, compositions including the enzymes, and methods of using the enzymes.

IPC Classes  ?

  • C12N 9/84 - Penicillin amidase
  • C07K 14/62 - Insulins
  • C12P 21/02 - Preparation of peptides or proteins having a known sequence of two or more amino acids, e.g. glutathione

69.

ENGINEERED THREONINE ALDOLASES AND AMINO ACID DECARBOXYLASES

      
Application Number 18714030
Status Pending
Filing Date 2022-12-01
First Publication Date 2025-01-30
Owner Codexis, Inc. (USA)
Inventor
  • Alvizo, Oscar
  • Novick, Scott J.
  • Subramanian, Nandhitha
  • Schlama, Thierry

Abstract

The present invention provides engineered threonine aldolase and amino acid decarboxylase polypeptides useful for the production of the chiral tertiary amino alcohols, as well as polynucleotides, compositions, and methods utilizing these engineered polypeptides.

IPC Classes  ?

70.

ENGINEERED DNA POLYMERASE VARIANTS

      
Application Number 18903185
Status Pending
Filing Date 2024-10-01
First Publication Date 2025-01-23
Owner Codexis, Inc. (USA)
Inventor
  • Bermudez, Ericka
  • Elgart, David
  • Kruse, Nikki D.
  • Miller, Mathew G.
  • Mitchell, Vesna
  • Nazor, Jovana
  • Subramanian, Nandhitha

Abstract

The present disclosure relates to engineered DNA polymerase polypeptides and compositions thereof, as well as polynucleotides encoding the engineered DNA polymerase polypeptides. The present disclosure also provides methods of using the engineered DNA polymerase polypeptides or compositions thereof for diagnostic and other purposes.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12N 15/63 - Introduction of foreign genetic material using vectorsVectorsUse of hosts thereforRegulation of expression

71.

ENGINEERED PURINE NUCLEOSIDE PHOSPHORYLASE VARIANT ENZYMES

      
Application Number 18906502
Status Pending
Filing Date 2024-10-04
First Publication Date 2025-01-23
Owner Codexis, Inc. (USA)
Inventor
  • Novick, Scott J.
  • Dellas, Nikki
  • Mitchell, Vesna
  • Duan, Da
  • Nazor, Jovana
  • Alvizo, Oscar
  • Sowell-Kantz, Auric Anthony
  • Moore, Jeffrey C.
  • Huffman, Mark A.
  • Rodriguez-Granillo, Agustina
  • Verma, Deeptak
  • Marshall, Nicholas M.
  • Russell, Jay H.
  • Canada, Keith A.

Abstract

The present invention provides engineered purine nucleoside phosphorylase (PNP) enzymes, polypeptides having PNP activity, and polynucleotides encoding these enzymes, as well as vectors and host cells comprising these polynucleotides and polypeptides. Methods for producing PNP enzymes are also provided. The present invention further provides compositions comprising the PNP enzymes and methods of using the engineered PNP enzymes. The present invention finds particular use in the production of pharmaceutical compounds.

IPC Classes  ?

  • C12N 15/63 - Introduction of foreign genetic material using vectorsVectorsUse of hosts thereforRegulation of expression

72.

T7 RNA POLYMERASE VARIANTS

      
Application Number 18909833
Status Pending
Filing Date 2024-10-08
First Publication Date 2025-01-23
Owner Codexis, Inc. (USA)
Inventor
  • Miller, Mathew G.
  • Chng, Chinping
  • Alvizo, Oscar
  • Mayo, Melissa Ann
  • Riggins, James Nicholas
  • Yi, Xiang
  • Penfield, Jonathan S.
  • Huisman, Gjalt W.
  • Davis, Jared
  • Saotome, Yasushi

Abstract

The present invention provides engineered RNA polymerase variants and compositions comprising these variants. The present invention further provides engineered T7 RNA polymerase variants and compositions comprising these variants. These variants have been evolved for selective incorporation of the m7G(5′)ppp(5′)m7G cap analog over GTP at the initiation of in vitro transcription. The present invention also provides methods for selective capping of RNA transcripts.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12N 15/00 - Mutation or genetic engineeringDNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purificationUse of hosts therefor
  • C12P 19/34 - Polynucleotides, e.g. nucleic acids, oligoribonucleotides

73.

BIOCATALYSTS FOR EZETIMIBE SYNTHESIS

      
Application Number 18886292
Status Pending
Filing Date 2024-09-16
First Publication Date 2025-01-09
Owner Codexis Inc. (USA)
Inventor
  • Crowe, Michael A.
  • Alvizo, Oscar
  • Behrouzian, Behnaz
  • Bong, Yong Koy
  • Collier, Steven J.
  • Gohel, Anupam
  • Mavinahalli, Jagedeesh
  • Modukuru, Naga K.
  • Mundorff, Emily
  • Smith, Derek J.
  • Song, Shiwei
  • Yeo, Wan Lin

Abstract

The present disclosure relates to non-naturally occurring polypeptides useful for preparing Ezetimibe, polynucleotides encoding the polypeptides, and methods of using the polypeptides.

IPC Classes  ?

  • C12N 9/04 - Oxidoreductases (1.), e.g. luciferase acting on CHOH groups as donors, e.g. glucose oxidase, lactate dehydrogenase (1.1)
  • A61K 38/00 - Medicinal preparations containing peptides
  • C07K 14/47 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from animalsPeptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from humans from vertebrates from mammals
  • C12P 17/10 - Nitrogen as only ring hetero atom
  • C12P 17/14 - Nitrogen or oxygen as hetero atom and at least one other diverse hetero ring atom in the same ring

74.

ENGINEERED PANTOTHENATE KINASE VARIANT ENZYMES

      
Application Number 18822990
Status Pending
Filing Date 2024-09-03
First Publication Date 2024-12-26
Owner Codexis, Inc. (USA)
Inventor
  • Borra-Garske, Margie Tabuga
  • Alvizo, Oscar
  • Miller, Lillian Jasmine
  • Slaton, Jesse B.
  • Petkova, Aksiniya Lyubenova
  • Subramanian, Nandhitha
  • Kolev, Joshua
  • Fryszkowska, Anna
  • Rodriguez-Granillo, Agustina
  • Murphy, Grant

Abstract

The present invention provides engineered pantothenate kinase (PanK) enzymes, polypeptides having PanK activity, and polynucleotides encoding these enzymes, as well as vectors and host cells comprising these polynucleotides and polypeptides. Methods for producing PanK enzymes are also provided. The present invention further provides compositions comprising the PanK enzymes and methods of using the engineered PanK enzymes. The present invention finds particular use in the production of pharmaceutical compounds.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)

75.

PENICILLIN-G ACYLASES

      
Application Number 18813482
Status Pending
Filing Date 2024-08-23
First Publication Date 2024-12-12
Owner Codexis, Inc. (USA)
Inventor
  • Alvizo, Oscar
  • Elgart, David
  • Orr, Robert Kevin
  • Riggins, James Nicholas
  • Fryszkowska, Anna
  • Lexa, Katrina W.
  • Yi, Xiang
  • Duan, Da
  • Moffett, Courtney Dianne
  • Dellas, Nikki
  • Mitchell, Vesna

Abstract

The present invention provides engineered penicillin G acylase (PGA) enzymes, polynucleotides encoding the enzymes, compositions comprising the enzymes, and methods of using the engineered PGA enzymes.

IPC Classes  ?

  • C12N 9/84 - Penicillin amidase
  • C07K 14/62 - Insulins
  • C12P 21/02 - Preparation of peptides or proteins having a known sequence of two or more amino acids, e.g. glutathione

76.

ENGINEERED PROTEASE POLYPEPTIDES

      
Application Number 18679281
Status Pending
Filing Date 2024-05-30
First Publication Date 2024-12-12
Owner
  • Codexis, Inc. (USA)
  • Société des Produits Nestlé S.A. (Switzerland)
Inventor
  • Chng, Chinping
  • Cong, Ruth L.
  • Duan, Da
  • Ferrer, Brian
  • Garcia, Ravi David
  • Kruse, Nikki D.
  • Kumar, Hirdesh
  • Millet, Stephen Joshua Macaso
  • Windgassen, Trica
  • Zhu, Liang

Abstract

The present disclosure provides engineered protease polypeptides, recombinant polynucleotides encoding the engineered protease polypeptides, and uses of the engineered protease polypeptides in therapeutic applications.

IPC Classes  ?

  • C12N 9/54 - Proteinases derived from bacteria bacteria being Bacillus
  • C12N 9/96 - Stabilising an enzyme by forming an adduct or a compositionForming enzyme conjugates

77.

ENGINEERED PROTEASE POLYPEPTIDES

      
Application Number US2024031771
Publication Number 2024/249694
Status In Force
Filing Date 2024-05-30
Publication Date 2024-12-05
Owner
  • CODEXIS, INC. (USA)
  • SOCIETE DES PRODUITS NESTLE S.A. (Switzerland)
Inventor
  • Chng, Chinping
  • Cong, Ruth, L.
  • Duan, Da
  • Ferrer, Brian
  • Garcia, Ravi, David
  • Kruse, Nikki, D.
  • Kumar, Hirdesh
  • Millet, Stephen, Joshua, Macaso
  • Windgassen, Tricia
  • Zhu, Liang

Abstract

The present disclosure provides engineered protease polypeptides, recombinant polynucleotides encoding the engineered protease polypeptides, and uses of the engineered protease polypeptides in therapeutic applications.

IPC Classes  ?

  • C11D 3/386 - Preparations containing enzymes
  • C12N 9/54 - Proteinases derived from bacteria bacteria being Bacillus
  • C12N 9/64 - Proteinases derived from animal tissue, e.g. rennin

78.

ENGINEERED RNA POLYMERASE VARIANTS

      
Application Number US2024028783
Publication Number 2024/238327
Status In Force
Filing Date 2024-05-10
Publication Date 2024-11-21
Owner CODEXIS, INC. (USA)
Inventor
  • Camacho Hernandez, Martha
  • Miller, Mathew, G.
  • Nazor, Jovana
  • Nguyen, James, D.
  • Patel, Anand
  • Rui, Zhe

Abstract

The present disclosure relates to engineered RNA polymerase polypeptides and compositions thereof, as well as polynucleotides encoding the engineered RNA polymerase polypeptides. The present disclosure also provides methods of using the engineered RNA polymerase polypeptides or compositions thereof for producing RNA.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12P 19/34 - Polynucleotides, e.g. nucleic acids, oligoribonucleotides

79.

ENGINEERED RNA POLYMERASE VARIANTS

      
Application Number US2024028987
Publication Number 2024/238409
Status In Force
Filing Date 2024-05-10
Publication Date 2024-11-21
Owner
  • CODEXIS, INC. (USA)
  • PFIZER INC. (USA)
Inventor
  • Artz, Jacob, Hansen
  • Camacho Hernandez, Martha
  • Fell, Jason
  • Miller, Mathew, G.
  • Nazor, Jovana
  • Nguyen, James, D.
  • Patel, Anand
  • Rui, Zhe

Abstract

The present disclosure relates to engineered RNA polymerase polypeptides and compositions thereof, as well as polynucleotides encoding the engineered RNA polymerase polypeptides. The present disclosure also provides methods of using the engineered RNA polymerase polypeptides or compositions thereof for producing RNA.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12P 19/34 - Polynucleotides, e.g. nucleic acids, oligoribonucleotides

80.

ENGINEERED AMYLASE VARIANTS

      
Application Number 18789167
Status Pending
Filing Date 2024-07-30
First Publication Date 2024-11-21
Owner
  • Codexis, Inc. (USA)
  • Societe des Produits Nestle S.A. (Switzerland)
Inventor
  • Chng, Chinping
  • Dellas, Nikki
  • Duan, Da
  • Garcia, Ravi David
  • Maniar, Harvinder Chagger

Abstract

The present invention provides engineered amylase polypeptides and compositions thereof. The engineered amylase polypeptides have been optimized to provide improved thermostability, protease stability, and stability under a range of pH conditions, including acidic (pH<7) conditions. The invention also relates to the use of the compositions comprising the engineered amylase polypeptides for therapeutic and/or nutritional purposes. The present invention also provides polynucleotides encoding the engineered amylase polypeptides, as well as methods for making the engineered polynucleotides and amylase polypeptides.

IPC Classes  ?

  • C12N 9/26 - Hydrolases (3.) acting on glycosyl compounds (3.2) acting on alpha-1, 4-glucosidic bonds, e.g. hyaluronidase, invertase, amylase
  • A61K 38/47 - Hydrolases (3) acting on glycosyl compounds (3.2), e.g. cellulases, lactases
  • A61P 1/18 - Drugs for disorders of the alimentary tract or the digestive system for pancreatic disorders, e.g. pancreatic enzymes

81.

RNA POLYMERASE VARIANTS

      
Application Number US2024028884
Publication Number 2024/238367
Status In Force
Filing Date 2024-05-10
Publication Date 2024-11-21
Owner CODEXIS, INC. (USA)
Inventor
  • Bakhtina, Marina, Mikhailovna
  • Copeland, Rachelle
  • Duran, Aldo
  • Knight, Anders, Matthew
  • Mayo, Melissa, Ann

Abstract

The present disclosure relates to engineered RNA polymerase polypeptides and compositions thereof, as well as polynucleotides encoding the engineered RNA polymerase polypeptides. The present disclosure also provides methods of using the engineered RNA polymerase polypeptides or compositions thereof for producing RNA.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12P 19/34 - Polynucleotides, e.g. nucleic acids, oligoribonucleotides

82.

ECO SYNTHESIS

      
Serial Number 98863642
Status Registered
Filing Date 2024-11-20
Registration Date 2025-08-12
Owner Codexis, Inc. ()
NICE Classes  ? 40 - Treatment of materials; recycling, air and water treatment,

Goods & Services

RNA manufacturing services for others utilizing proprietary enzymatic technologies to enable nucleic acid therapeutics development

83.

ENGINEERED RNA POLYMERASE VARIANTS

      
Application Number 18660729
Status Pending
Filing Date 2024-05-10
First Publication Date 2024-11-14
Owner CODEXIS, INC. (USA)
Inventor
  • Camacho Hernandez, Martha
  • Miller, Mathew G.
  • Nazor, Jovana
  • Nguyen, James D.
  • Patel, Anand
  • Rui, Zhe

Abstract

The present disclosure relates to engineered RNA polymerase polypeptides and compositions thereof, as well as polynucleotides encoding the engineered RNA polymerase polypeptides. The present disclosure also provides methods of using the engineered RNA polymerase polypeptides or compositions thereof for producing RNA.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12N 9/14 - Hydrolases (3.)
  • C12N 9/16 - Hydrolases (3.) acting on ester bonds (3.1)
  • C12N 15/63 - Introduction of foreign genetic material using vectorsVectorsUse of hosts thereforRegulation of expression

84.

RNA POLYMERASE VARIANTS

      
Application Number 18660851
Status Pending
Filing Date 2024-05-10
First Publication Date 2024-11-14
Owner CODEXIS, INC. (USA)
Inventor
  • Bakhtina, Marina Mikhailovna
  • Copeland, Rachelle
  • Duran, Aldo
  • Knight, Anders Matthew
  • Mayo, Melissa Ann

Abstract

The present disclosure relates to engineered RNA polymerase polypeptides and compositions thereof, as well as polynucleotides encoding the engineered RNA polymerase polypeptides. The present disclosure also provides methods of using the engineered RNA polymerase polypeptides or compositions thereof for producing RNA.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12N 9/14 - Hydrolases (3.)

85.

ENGINEERED RNA POLYMERASE VARIANTS

      
Application Number 18661523
Status Pending
Filing Date 2024-05-10
First Publication Date 2024-11-14
Owner CODEXIS, INC. (USA)
Inventor
  • Artz, Jacob Hansen
  • Camacho Hernandez, Martha
  • Fell, Jason
  • Miller, Mathew G.
  • Nazor, Jovana
  • Nguyen, James D.
  • Patel, Anand
  • Rui, Zhe
  • Abyad, Jenna Tawil
  • Juhn, Hugo
  • Lotvin, Jason Arnold
  • Liu, Qi
  • Sztuba-Solinska, Joanna

Abstract

The present disclosure relates to engineered RNA polymerase polypeptides and compositions thereof, as well as polynucleotides encoding the engineered RNA polymerase polypeptides. The present disclosure also provides methods of using the engineered RNA polymerase polypeptides or compositions thereof for producing RNA.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12N 15/63 - Introduction of foreign genetic material using vectorsVectorsUse of hosts thereforRegulation of expression

86.

LOV-D ACYLTRANSFERASE MEDIATED ACYLATION

      
Application Number 18781007
Status Pending
Filing Date 2024-07-23
First Publication Date 2024-11-07
Owner Codexis Inc. (USA)
Inventor
  • Collier, Steven J.
  • Teo, Ee Ling
  • Sukumaran, Joly
  • Wilson, Robert J.
  • Xu, Junye

Abstract

Methods for the improved acylation of chemical substrates using LovD acyltransferases, thioesters having acyl groups, and (i) thiol scavengers and/or (ii) precipitating agents are presented. An improved method for the production of simvastatin using (i) activated charcoal as a thiol scavenger and/or (ii) ammonium hydroxide as a precipitating agent is also presented.

IPC Classes  ?

  • C12P 17/06 - Oxygen as only ring hetero atoms containing a six-membered hetero ring, e.g. fluorescein
  • C07K 14/00 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof
  • C12N 9/10 - Transferases (2.)
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12P 7/62 - Carboxylic acid esters

87.

P450-BM3 VARIANTS WITH IMPROVED ACTIVITY

      
Application Number US2023080715
Publication Number 2024/196434
Status In Force
Filing Date 2023-11-21
Publication Date 2024-09-26
Owner CODEXIS, INC. (USA)
Inventor
  • Entwistle, David
  • Fell, Jason
  • Jenne, Stephan
  • Knight, Anders Matthew
  • Ng, Simon
  • Reeves, Ryan D.
  • Seibel, Zara Maxine
  • Vroom, Jonathan

Abstract

terttert-Butoxycarbonylaminocyclopentanoic acid substrate.

IPC Classes  ?

  • A61K 38/41 - Porphyrin- or corrin-ring-containing peptides
  • C07K 14/80 - Cytochromes
  • C12N 9/00 - Enzymes, e.g. ligases (6.)ProenzymesCompositions thereofProcesses for preparing, activating, inhibiting, separating, or purifying enzymes

88.

P450-BM3 VARIANTS WITH IMPROVED ACTIVITY

      
Application Number 18516054
Status Pending
Filing Date 2023-11-21
First Publication Date 2024-09-26
Owner CODEXIS, INC. (USA)
Inventor
  • Entwistle, David
  • Fell, Jason
  • Jenne, Stephan
  • Knight, Anders Matthew
  • Ng, Simon
  • Reeves, Ryan D.
  • Seibel, Zara Maxine
  • Vroom, Jonathan

Abstract

The present invention provides improved P450-BM3 variants with improved activity. In some embodiments, the P450-BM3 variants exhibit improved activity on a 1-tert-Butoxycarbonylaminocyclopentanoic acid substrate.

IPC Classes  ?

  • C12N 9/02 - Oxidoreductases (1.), e.g. luciferase

89.

ENGINEERED DNA LIGASE VARIANTS

      
Application Number 18420040
Status Pending
Filing Date 2024-01-23
First Publication Date 2024-09-19
Owner Codexis, Inc. (USA)
Inventor
  • Artz, Jacob Hansen
  • Copeland, Rachelle
  • Fell, Jason
  • Knight, Anders Matthew
  • Krawczyk, Mikayla Jianghongxia
  • Miller, Mathew G.
  • Nazor, Jovana
  • Shoubber, Amani
  • Vroom, Jonathan

Abstract

The present disclosure relates to engineered DNA ligase polypeptides and compositions thereof, as well as polynucleotides encoding the engineered DNA ligase polypeptides. The present disclosure also provides methods of using the engineered DNA ligase polypeptides or compositions thereof in diagnostics and as a molecular biological tool.

IPC Classes  ?

  • C12N 9/00 - Enzymes, e.g. ligases (6.)ProenzymesCompositions thereofProcesses for preparing, activating, inhibiting, separating, or purifying enzymes

90.

Peroxidase activity towards 10-acetyl-3,7-dihydroxyphenoxazine

      
Application Number 18655701
Grant Number 12540314
Status In Force
Filing Date 2024-05-06
First Publication Date 2024-09-12
Grant Date 2026-02-03
Owner Codexis, Inc. (USA)
Inventor
  • Duan, Da
  • Sowell-Kantz, Auric Anthony
  • Petkova, Aksiniya Lyubenova
  • Nazor, Jovana
  • Subramanian, Nandhitha
  • Alvizo, Oscar

Abstract

The present invention provides engineered peroxidase enzymes, polypeptides having peroxidase activity, and polynucleotides encoding these enzymes, as well as vectors and host cells comprising these polynucleotides and polypeptides. Methods for producing peroxidase enzymes are also provided. The present invention further provides compositions comprising the peroxidase enzymes and methods of using the engineered peroxidase enzymes. The present invention finds particular use in the production of pharmaceutical and other compounds.

IPC Classes  ?

  • C12N 9/08 - Oxidoreductases (1.), e.g. luciferase acting on hydrogen peroxide as acceptor (1.11)

91.

Ketoreductase polypeptides for the preparation of phenylephrine

      
Application Number 18671324
Grant Number 12480100
Status In Force
Filing Date 2024-05-22
First Publication Date 2024-09-12
Grant Date 2025-11-25
Owner Codexis, Inc. (USA)
Inventor
  • Alvizo, Oscar
  • Collier, Steven J.
  • Hennemann, Hans-Georg Joerg
  • Oh, Seong Ho
  • Zha, Wenjuan

Abstract

The disclosure relates to engineered ketoreductase polypeptides and processes of using the polypeptides for production of phenylephrine.

IPC Classes  ?

  • C12N 9/04 - Oxidoreductases (1.), e.g. luciferase acting on CHOH groups as donors, e.g. glucose oxidase, lactate dehydrogenase (1.1)
  • A61K 31/137 - Arylalkylamines, e.g. amphetamine, epinephrine, salbutamol, ephedrine
  • C12P 13/00 - Preparation of nitrogen-containing organic compounds

92.

Engineered galactose oxidase variant enzymes

      
Application Number 18657101
Grant Number 12480099
Status In Force
Filing Date 2024-05-07
First Publication Date 2024-08-29
Grant Date 2025-11-25
Owner Codexis, Inc. (USA)
Inventor
  • Micklitsch, Christopher
  • Alvizo, Oscar
  • Nazor, Jovana
  • Maniar, Harvinder Chagger
  • Krawczyk, Mikayla Jianghongxia
  • Borra-Garske, Margie Tabuga
  • Subramanian, Nandhitha
  • Fryszkowska, Anna
  • Marshall, Nicholas M.
  • Rodriguez-Granillo, Agustina
  • Verma, Deeptak
  • Andrews, Dewan

Abstract

The present invention provides engineered galactose oxidase (GOase) enzymes, polypeptides having GOase activity, and polynucleotides encoding these enzymes, as well as vectors and host cells comprising these polynucleotides and polypeptides. Methods for producing GOase enzymes are also provided. The present invention further provides compositions comprising the GOase enzymes and methods of using the engineered GOase enzymes. The present invention finds particular use in the production of pharmaceutical and other compounds.

IPC Classes  ?

  • C12N 9/04 - Oxidoreductases (1.), e.g. luciferase acting on CHOH groups as donors, e.g. glucose oxidase, lactate dehydrogenase (1.1)
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12N 9/02 - Oxidoreductases (1.), e.g. luciferase
  • C12P 21/02 - Preparation of peptides or proteins having a known sequence of two or more amino acids, e.g. glutathione

93.

NEURAL SPHEROIDS

      
Application Number US2024015808
Publication Number 2024/173561
Status In Force
Filing Date 2024-02-14
Publication Date 2024-08-22
Owner CODEXIS, INC. (USA)
Inventor
  • Lee, Grace, Sohee
  • Schmitt, Christopher, Edward

Abstract

The present disclosure provides a method of preparing neural spheroids, the neural spheroid prepared by the method, and uses of the neural spheroids. In some embodiments, the present disclosure provides a method of forming neural spheroids, a three dimensional network of cells comprising neural and glial cells, where the method comprises culturing differentiated fore brain progenitor cells in a cell culture well having an ultra-low attachment surface and shaped to promote self-assembly of cells into neural spheroids.

IPC Classes  ?

  • C12N 5/0797 - Stem cellsProgenitor cells
  • C12N 5/00 - Undifferentiated human, animal or plant cells, e.g. cell linesTissuesCultivation or maintenance thereofCulture media therefor
  • C12N 5/074 - Adult stem cells
  • C12N 5/0789 - Stem cellsMultipotent progenitor cells
  • C12N 5/079 - Neural cells
  • C12N 5/07 - Animal cells or tissues
  • G01N 33/50 - Chemical analysis of biological material, e.g. blood, urineTesting involving biospecific ligand binding methodsImmunological testing

94.

ENGINEERED DNA POLYMERASE VARIANTS

      
Application Number 18628461
Status Pending
Filing Date 2024-04-05
First Publication Date 2024-08-08
Owner Codexis, Inc. (USA)
Inventor
  • Miller, Mathew G.
  • Mitchell, Vesna
  • Nazor, Jovana
  • Baskerville, Donald S.
  • Dellas, Nikki
  • Elgart, David
  • Vroom, Jonathan
  • Gomes, Sandy M.
  • Subramanian, Nandhitha
  • Bermudez, Ericka

Abstract

The present invention provides engineered DNA polymerase polypeptides and compositions thereof, as well as polynucleotides encoding the engineered DNA polymerase polypeptides. The invention also provides methods for use of the compositions comprising the engineered DNA polymerase polypeptides for diagnostic and other purposes.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)

95.

ENGINEERED GLUCOCEREBROSIDASE VARIANTS

      
Application Number US2024014039
Publication Number 2024/163765
Status In Force
Filing Date 2024-02-01
Publication Date 2024-08-08
Owner CODEXIS, INC. (USA)
Inventor
  • Artz, Jacob, Hansen
  • Botham, Rachel, Cathleen
  • Chen, Xingxiu
  • Francisco, Victorino, Miguel
  • Hallows, William, Casey
  • Heredia, Jeremiah, Dallas
  • Johnson, Londen, Christine
  • Millar, Douglas, Chamberlain
  • Onguka, Ouma
  • Schmitt, Christopher, Edward
  • Silverman, Adam, P.

Abstract

The present disclosure provides engineered glucocerebrosidases, polynucleotides encoding the engineered glucocerebrosidases, and methods of treating a deficiency in glucocerebroside activity using the engineered glucocerebrosidases or the recombinant polynucleotides encoding the engineered glucocerebrosidases.

IPC Classes  ?

  • A61K 38/47 - Hydrolases (3) acting on glycosyl compounds (3.2), e.g. cellulases, lactases
  • A61K 48/00 - Medicinal preparations containing genetic material which is inserted into cells of the living body to treat genetic diseasesGene therapy
  • C07K 14/00 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof
  • C12N 9/16 - Hydrolases (3.) acting on ester bonds (3.1)
  • C12N 9/24 - Hydrolases (3.) acting on glycosyl compounds (3.2)
  • C12N 9/38 - Hydrolases (3.) acting on glycosyl compounds (3.2) acting on beta-galactose-glycoside bonds, e.g. beta-galactosidase
  • C12N 9/42 - Hydrolases (3.) acting on glycosyl compounds (3.2) acting on beta-1, 4-glucosidic bonds, e.g. cellulase
  • C12N 15/86 - Viral vectors

96.

ENGINEERED AAV POLYPEPTIDES

      
Application Number US2024014362
Publication Number 2024/163979
Status In Force
Filing Date 2024-02-02
Publication Date 2024-08-08
Owner CODEXIS, INC. (USA)
Inventor
  • Akeefe, Hassibullah
  • Chng, Chinping
  • Del Greco, Elizabeth
  • Desautel, Sarah
  • Gebretsadik, Kahsay
  • Kruse, Nikki, D.
  • Kumar, Ambuj
  • Rivera-Velazquez, Mirella
  • Rohovie, Marcus
  • Schmitt, Christopher, Edward
  • Sedighi, Faezeh
  • Sero, Antoinette
  • Silverman, Adam, P.
  • Wong, Victoria

Abstract

The present disclosure provides engineered AAV capsid polypeptides, engineered MAAP polypeptides, and engineered AAP polypeptides as well as recombinant polynucleotides encoding the engineered AAV polypeptides. The present disclosure further provides use of the engineered AAV polypeptides and recombinant polynucleotides for producing rAAV viruses or rAAV virions.

IPC Classes  ?

  • C07K 14/005 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from viruses
  • C12N 15/86 - Viral vectors
  • C12N 7/00 - Viruses, e.g. bacteriophagesCompositions thereofPreparation or purification thereof
  • A61K 48/00 - Medicinal preparations containing genetic material which is inserted into cells of the living body to treat genetic diseasesGene therapy

97.

ENGINEERED DNA LIGASE VARIANTS

      
Application Number US2024012543
Publication Number 2024/158764
Status In Force
Filing Date 2024-01-23
Publication Date 2024-08-02
Owner CODEXIS, INC. (USA)
Inventor
  • Artz, Jacob Hansen
  • Copeland, Rachelle
  • Fell, Jason
  • Knight, Anders Matthew
  • Krawczyk, Mikayla Jianghongxia
  • Miller, Mathew G.
  • Nazor, Jovana
  • Shoubber, Amani
  • Vroom, Jonathan

Abstract

The present disclosure relates to engineered DNA ligase polypeptides and compositions thereof, as well as polynucleotides encoding the engineered DNA ligase polypeptides. The present disclosure also provides methods of using the engineered DNA ligase polypeptides or compositions thereof in diagnostics and as a molecular biological tool.

IPC Classes  ?

  • C12N 9/00 - Enzymes, e.g. ligases (6.)ProenzymesCompositions thereofProcesses for preparing, activating, inhibiting, separating, or purifying enzymes
  • C12N 15/11 - DNA or RNA fragmentsModified forms thereof
  • C12N 15/63 - Introduction of foreign genetic material using vectorsVectorsUse of hosts thereforRegulation of expression

98.

ENGINEERED DNA LIGASE VARIANTS

      
Document Number 03280789
Status Pending
Filing Date 2024-01-23
Open to Public Date 2024-08-02
Owner CODEXIS, INC. (USA)
Inventor
  • Artz, Jacob Hansen
  • Copeland, Rachelle
  • Fell, Jason
  • Knight, Anders Matthew
  • Krawczyk, Mikayla Jianghongxia
  • Miller, Mathew G.
  • Nazor, Jovana
  • Shoubber, Amani
  • Vroom, Jonathan

IPC Classes  ?

  • C12N 9/00 - Enzymes, e.g. ligases (6.)ProenzymesCompositions thereofProcesses for preparing, activating, inhibiting, separating, or purifying enzymes
  • C12N 15/11 - DNA or RNA fragmentsModified forms thereof
  • C12N 15/63 - Introduction of foreign genetic material using vectorsVectorsUse of hosts thereforRegulation of expression

99.

ENGINEERED IMINE REDUCTASES AND METHODS FOR THE REDUCTIVE AMINATION OF KETONE AND AMINE COMPOUNDS

      
Application Number 18638060
Status Pending
Filing Date 2024-04-17
First Publication Date 2024-08-01
Owner Codexis, Inc. (USA)
Inventor
  • Borra-Garsek, Margie
  • Alvizo, Oscar
  • Mayo, Melissa
  • Jenne, Stephan
  • Sowell-Kantz, Auric Anthoney
  • Molinaro, Carmela

Abstract

The present application provides engineered polypeptides having imine or oxime reductase activity, polynucleotides encoding the engineered polypeptides, host cells capable of expressing the engineered polypeptides, and methods of using these engineered polypeptides with a range of ketone and amine substrate compounds to prepare secondary and tertiary amine product compounds.

IPC Classes  ?

  • C12N 9/06 - Oxidoreductases (1.), e.g. luciferase acting on nitrogen containing compounds as donors (1.4, 1.5, 1.7)
  • C12N 9/02 - Oxidoreductases (1.), e.g. luciferase

100.

Ketoreductase polypeptides for the production of (R)-3-hydroxythiolane

      
Application Number 18614099
Grant Number 12378585
Status In Force
Filing Date 2024-03-22
First Publication Date 2024-07-11
Grant Date 2025-08-05
Owner Codexis, Inc. (USA)
Inventor
  • Liang, Jack S.
  • Jenne, Stephan
  • Mundorff, Emily
  • Voladri, Rama
  • Lalonde, James J.
  • Huisman, Gjalt W.

Abstract

The present disclosure provides engineered ketoreductase enzymes having improved properties as compared to a naturally occurring wild-type ketoreductase enzyme. Also provided are polynucleotides encoding the engineered ketoreductase enzymes, host cells capable of expressing the engineered ketoreductase enzymes, and methods of using the engineered ketoreductase enzymes to synthesize chiral compounds.

IPC Classes  ?

  • C12P 17/00 - Preparation of heterocyclic carbon compounds with only O, N, S, Se, or Te as ring hetero atoms
  • C12N 9/04 - Oxidoreductases (1.), e.g. luciferase acting on CHOH groups as donors, e.g. glucose oxidase, lactate dehydrogenase (1.1)
  • C12P 17/16 - Preparation of heterocyclic carbon compounds with only O, N, S, Se, or Te as ring hetero atoms containing two or more hetero rings
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