Singular Genomics Systems, Inc.

United States of America

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C12Q 1/6869 - Methods for sequencing 71
C12Q 1/6874 - Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation [SBH] 66
C12Q 1/68 - Measuring or testing processes involving enzymes, nucleic acids or microorganismsCompositions thereforProcesses of preparing such compositions involving nucleic acids 32
C12Q 1/6841 - In situ hybridisation 32
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01 - Chemical and biological materials for industrial, scientific and agricultural use 25
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1.

NUCLEIC ACID DELIVERY SCAFFOLDS

      
Application Number 18844864
Status Pending
Filing Date 2023-03-09
First Publication Date 2025-06-12
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Kalaj, Mark
  • Witters, Daan

Abstract

Arrays are an important tool in biomedical research, providing a platform that arranges biological samples and enables high-throughput analyses. Delivering breakthroughs in proteomics, multiplexed immunoassays, and complex genomic analyses, arrays (e.g., microarrays and nanoarrays) can be designed to host thousands, millions, or even billions, of features that are subjected to simultaneous reaction conditions. Disclosed herein, inter alia, are degradable nanoparticles, nanoarrays, and methods of use thereof.

IPC Classes  ?

  • C12Q 1/6834 - Enzymatic or biochemical coupling of nucleic acids to a solid phase
  • C12Q 1/6869 - Methods for sequencing
  • C12Q 1/6874 - Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation [SBH]

2.

MULTIOMIC ANALYSIS DEVICE AND METHODS OF USE THEREOF

      
Application Number 19048060
Status Pending
Filing Date 2025-02-07
First Publication Date 2025-06-05
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Kovacs, Sandor
  • Glezer, Eli N.
  • Frye, Christopher

Abstract

Disclosed herein, inter alia, are devices, compositions, kits, and methods for interrogating biological samples.

IPC Classes  ?

3.

SYSTEMS AND METHODS FOR MULTICOLOR IMAGING

      
Application Number 19039258
Status Pending
Filing Date 2025-01-28
First Publication Date 2025-05-29
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Trintchouk, Fedor
  • Glezer, Eli N.

Abstract

Disclosed herein, inter alia, are methods and systems of image analysis useful for rapidly identifying and/or quantifying features.

IPC Classes  ?

  • G01N 21/64 - FluorescencePhosphorescence
  • G02B 21/08 - Condensers
  • G02B 21/16 - Microscopes adapted for ultraviolet illumination
  • G02B 21/18 - Arrangements with more than one light-path, e.g. for comparing two specimens
  • G02B 21/26 - StagesAdjusting means therefor
  • G02B 27/10 - Beam splitting or combining systems
  • H04N 23/16 - Optical arrangements associated therewith, e.g. for beam-splitting or for colour correction
  • H04N 23/45 - Cameras or camera modules comprising electronic image sensorsControl thereof for generating image signals from two or more image sensors being of different type or operating in different modes, e.g. with a CMOS sensor for moving images in combination with a charge-coupled device [CCD] for still images
  • H04N 23/56 - Cameras or camera modules comprising electronic image sensorsControl thereof provided with illuminating means
  • H04N 23/84 - Camera processing pipelinesComponents thereof for processing colour signals

4.

NUCLEIC ACID AMPLIFICATION AND METHYLATION PATTERN RETENTION

      
Application Number 18836312
Status Pending
Filing Date 2023-02-10
First Publication Date 2025-05-15
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Witters, Daan
  • Glezer, Eli N.

Abstract

Disclosed herein, inter alia, are compositions, methods, and kits useful for detecting nucleobase modifications on one or both strands of a double-stranded nucleic acid fragment.

IPC Classes  ?

  • C12Q 1/6806 - Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay
  • C12Q 1/48 - Measuring or testing processes involving enzymes, nucleic acids or microorganismsCompositions thereforProcesses of preparing such compositions involving transferase
  • C12Q 1/6844 - Nucleic acid amplification reactions

5.

DEVICES USEFUL FOR SAMPLE MANIPULATION

      
Application Number 18940271
Status Pending
Filing Date 2024-11-07
First Publication Date 2025-05-15
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Kovacs, Sandor
  • Ishitsuka, Yuji
  • Marshall, Kevin
  • Koh, Jaekyung

Abstract

Disclosed herein, inter alia, are devices and methods for efficient transfer and analyses of cellular material, tissue samples, such as tissue sections.

IPC Classes  ?

  • G01N 1/28 - Preparing specimens for investigation

6.

METHODS AND NUCLEOTIDE COMPOSITIONS FOR SEQUENCING

      
Application Number 18940449
Status Pending
Filing Date 2024-11-07
First Publication Date 2025-05-15
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Glezer, Eli N.
  • Graham, Ronald

Abstract

Disclosed herein, inter alia, are nucleotide compounds including cleavable moieties and fluorophore moieties, and methods of use thereof.

IPC Classes  ?

  • C12Q 1/6874 - Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation [SBH]
  • C12Q 1/6818 - Hybridisation assays characterised by the detection means involving interaction of two or more labels, e.g. resonant energy transfer

7.

PROXIMITY DETECTION OF BIOMOLECULE INTERACTIONS

      
Application Number 18915941
Status Pending
Filing Date 2024-10-15
First Publication Date 2025-04-17
Owner Singular Genomics Systems, Inc. (USA)
Inventor Glezer, Eli N.

Abstract

Disclosed herein, inter alia, are compositions and methods for detection of biomolecules and biomolecular interactions.

IPC Classes  ?

  • C12Q 1/6874 - Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation [SBH]
  • C12Q 1/6804 - Nucleic acid analysis using immunogens
  • C12Q 1/6841 - In situ hybridisation
  • C12Q 1/6855 - Ligating adaptors

8.

COMPOSITIONS AND METHODS FOR NUCLEIC ACID SEQUENCING

      
Application Number 18988274
Status Pending
Filing Date 2024-12-19
First Publication Date 2025-04-17
Owner Singular Genomics Systems Inc. (USA)
Inventor
  • Glezer, Eli N.
  • Varnosfaderani, Mohammad Vatankhah
  • Witters, Daan
  • Karimkhani, Vahid

Abstract

Provided herein are methods and compositions for improved sequencing techniques using, for example, polymeric particles and/or three-dimensional structures.

IPC Classes  ?

  • C12Q 1/6869 - Methods for sequencing
  • C12Q 1/6844 - Nucleic acid amplification reactions
  • C12Q 1/6874 - Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation [SBH]
  • G01N 33/53 - ImmunoassayBiospecific binding assayMaterials therefor
  • G01N 33/544 - ImmunoassayBiospecific binding assayMaterials therefor with an insoluble carrier for immobilising immunochemicals the carrier being organic

9.

METHODS FOR DETECTING POLYNUCLEOTIDE SEQUENCES IN SITU

      
Application Number 18958854
Status Pending
Filing Date 2024-11-25
First Publication Date 2025-04-10
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Pawlowski, Andrew
  • Youn, Yeoan
  • Lawson, Michael
  • Fabani, Martin Maria

Abstract

Disclosed herein, inter alia, are compositions and methods of use thereof for detecting polynucleotides from and within cells and tissues.

IPC Classes  ?

  • C12Q 1/6874 - Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation [SBH]
  • C12Q 1/25 - Measuring or testing processes involving enzymes, nucleic acids or microorganismsCompositions thereforProcesses of preparing such compositions involving enzymes not classifiable in groups
  • C12Q 1/6841 - In situ hybridisation
  • C12Q 1/6862 - Ligase chain reaction [LCR]

10.

METHODS FOR IN SITU TRANSCRIPTOMICS AND PROTEOMICS

      
Application Number 18978794
Status Pending
Filing Date 2024-12-12
First Publication Date 2025-04-03
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Glezer, Eli N.
  • Cang, Hu
  • Hong, Zhenmin

Abstract

Disclosed herein, inter alia, are compositions and methods of use thereof for interrogating a cell.

IPC Classes  ?

11.

FLOW CELL RECEIVER AND METHODS OF USE

      
Application Number 18945042
Status Pending
Filing Date 2024-11-12
First Publication Date 2025-03-27
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Kovacs, Sandor
  • Baranson, David
  • Glezer, Eli N.

Abstract

The present disclosure relates to a flow cell receiver. The flow cell receiver can include at least one platen, having a plurality of ports. The flow cell receiver can include magnets. The flow cell receiver can be configured to automatically align, secure, and retain a flow cell carrier containing a flow cell.

IPC Classes  ?

  • B01L 9/00 - Supporting devicesHolding devices

12.

CLEAVABLE DISULFIDE LINKERS AND USES THEREOF

      
Application Number 18949596
Status Pending
Filing Date 2024-11-15
First Publication Date 2025-03-27
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Graham, Ronald
  • Cila, Megha

Abstract

Disclosed herein, inter alia, are methods and cleavable compounds that minimize byproduct formation following cleavage in situ.

IPC Classes  ?

  • C12Q 1/6874 - Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation [SBH]
  • C07H 19/10 - Pyrimidine radicals with the saccharide radical being esterified by phosphoric or polyphosphoric acids
  • C07H 19/20 - Purine radicals with the saccharide radical being esterified by phosphoric or polyphosphoric acids
  • C12Q 1/6806 - Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay
  • C12Q 1/6876 - Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes

13.

ANALYZING CELL SAMPLES

      
Application Number 18959243
Status Pending
Filing Date 2024-11-25
First Publication Date 2025-03-20
Owner Singular Genomics Systems, Inc. (USA)
Inventor Glezer, Eli N.

Abstract

Disclosed herein, inter alia, are methods and compositions useful for detecting multiple biological targets.

IPC Classes  ?

  • G01N 33/53 - ImmunoassayBiospecific binding assayMaterials therefor
  • G01N 33/542 - ImmunoassayBiospecific binding assayMaterials therefor with immune complex formed in liquid phase with steric inhibition or signal modification, e.g. fluorescent quenching

14.

Microplate

      
Application Number 29915376
Grant Number D1067462
Status In Force
Filing Date 2023-10-30
First Publication Date 2025-03-18
Grant Date 2025-03-18
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Jeffrey-Coker, Bandele J.
  • Glezer, Eli N.
  • Ishitsuka, Yuji

15.

FLUORINATED NUCLEOTIDES AND USES THEREOF

      
Application Number 18948143
Status Pending
Filing Date 2024-11-14
First Publication Date 2025-03-13
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Graham, Ronald
  • Spaventa, Andrew
  • Glezer, Eli N.

Abstract

Disclosed herein, inter alia, are compounds, compositions, and methods of use thereof in the sequencing a nucleic acid.

IPC Classes  ?

  • C07H 21/04 - Compounds containing two or more mononucleotide units having separate phosphate or polyphosphate groups linked by saccharide radicals of nucleoside groups, e.g. nucleic acids with deoxyribosyl as saccharide radical
  • C12Q 1/6869 - Methods for sequencing

16.

COMPOSITIONS AND METHODS FOR SERIAL TARGET DETECTION

      
Application Number 18830071
Status Pending
Filing Date 2024-09-10
First Publication Date 2025-03-13
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Glezer, Eli N.
  • Graham, Ronald

Abstract

Disclosed herein, inter alia, are methods and compositions useful for serially detecting multiple biological targets.

IPC Classes  ?

  • G01N 33/542 - ImmunoassayBiospecific binding assayMaterials therefor with immune complex formed in liquid phase with steric inhibition or signal modification, e.g. fluorescent quenching
  • G01N 33/569 - ImmunoassayBiospecific binding assayMaterials therefor for microorganisms, e.g. protozoa, bacteria, viruses

17.

Microplate assembly

      
Application Number 29916426
Grant Number D1066735
Status In Force
Filing Date 2023-11-10
First Publication Date 2025-03-11
Grant Date 2025-03-11
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Jeffrey-Coker, Bandele J.
  • Glezer, Eli N.
  • Ishitsuka, Yuji

18.

Microplate assembly

      
Application Number 29916428
Grant Number D1066732
Status In Force
Filing Date 2023-11-10
First Publication Date 2025-03-11
Grant Date 2025-03-11
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Jeffrey-Coker, Bandele J.
  • Glezer, Eli N.
  • Ishitsuka, Yuji

19.

METHOD FOR TISSUE SECTION IMMOBILIZATION AND RETENTION

      
Application Number 18943409
Status Pending
Filing Date 2024-11-11
First Publication Date 2025-02-27
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Ishitsuka, Yuji
  • Hong, Zhenmin
  • Glezer, Eli N.
  • Cang, Hu
  • Dempsey, William
  • Ding, Weiqiao
  • Koh, Jaekyung
  • Varnosfaderani, Mohammad Vatankhah

Abstract

Disclosed herein, inter alia, are methods for the transfer and manipulation of tissue sections using hydrogel substrates.

IPC Classes  ?

  • G01N 1/30 - StainingImpregnating
  • A61L 27/28 - Materials for coating prostheses
  • A61L 27/52 - Hydrogels or hydrocolloids
  • C12Q 1/6841 - In situ hybridisation
  • C12Q 1/6874 - Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation [SBH]
  • G01N 1/06 - Devices for withdrawing samples in the solid state, e.g. by cutting providing a thin slice, e.g. microtome
  • G01N 1/28 - Preparing specimens for investigation
  • G01N 1/31 - Apparatus therefor
  • G01N 1/36 - Embedding or analogous mounting of samples
  • G01N 23/2251 - Investigating or analysing materials by the use of wave or particle radiation, e.g. X-rays or neutrons, not covered by groups , or by measuring secondary emission from the material using electron or ion microprobes using incident electron beams, e.g. scanning electron microscopy [SEM]
  • G02B 21/34 - Microscope slides, e.g. mounting specimens on microscope slides

20.

Device for tissue section immobilization and retention

      
Application Number 18943398
Grant Number 12298211
Status In Force
Filing Date 2024-11-11
First Publication Date 2025-02-27
Grant Date 2025-05-13
Owner SINGULAR GENOMICS SYSTEMS, INC. (USA)
Inventor
  • Ishitsuka, Yuji
  • Hong, Zhenmin
  • Glezer, Eli N.
  • Cang, Hu
  • Dempsey, William
  • Ding, Weiqiao
  • Koh, Jaekyung
  • Varnosfaderani, Mohammad Vatankhah

Abstract

Disclosed herein, inter alia, are devices and methods for transfer and analysis of tissue sections using carrier substrates.

IPC Classes  ?

  • G01N 1/00 - SamplingPreparing specimens for investigation
  • A61L 27/28 - Materials for coating prostheses
  • A61L 27/52 - Hydrogels or hydrocolloids
  • C12Q 1/6841 - In situ hybridisation
  • C12Q 1/6874 - Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation [SBH]
  • G01N 1/06 - Devices for withdrawing samples in the solid state, e.g. by cutting providing a thin slice, e.g. microtome
  • G01N 1/28 - Preparing specimens for investigation
  • G01N 1/30 - StainingImpregnating
  • G01N 1/31 - Apparatus therefor
  • G01N 1/36 - Embedding or analogous mounting of samples
  • G01N 23/2251 - Investigating or analysing materials by the use of wave or particle radiation, e.g. X-rays or neutrons, not covered by groups , or by measuring secondary emission from the material using electron or ion microprobes using incident electron beams, e.g. scanning electron microscopy [SEM]
  • G02B 21/34 - Microscope slides, e.g. mounting specimens on microscope slides

21.

METHODS AND DEVICES FOR MANIPULATING BIOLOGICAL SAMPLES

      
Application Number 18921957
Status Pending
Filing Date 2024-10-21
First Publication Date 2025-02-06
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Ishitsuka, Yuji
  • Koh, Jaekyung
  • Stover, Robert James
  • Shekhtmeyster, Pavel
  • Kovacs, Sandor
  • Cang, Hu
  • Rascon, Valeria

Abstract

Disclosed herein, inter alia, are devices and methods for efficient transfer and analyses of cellular material, tissue samples, such as tissue sections, using carrier substrates and devices.

IPC Classes  ?

22.

MANIPULATING AND DETECTING BIOLOGICAL SAMPLES

      
Application Number 18704416
Status Pending
Filing Date 2022-10-20
First Publication Date 2025-01-30
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Ishitsuka, Yuji
  • Hong, Zhenmin
  • Glezer, Eli N.
  • Cang, Hu
  • Dempsey, William
  • Ding, Weiqiao
  • Koh, Jaekyung
  • Varnosfaderani, Mohammad Vatankhah

Abstract

Disclosed herein, inter alia, are compositions and methods for efficient transfer and analyses of cellular material, tissue samples, such as tissue sections, using carrier substrates.

IPC Classes  ?

  • C12Q 1/6825 - Nucleic acid detection involving sensors
  • C12Q 1/37 - Measuring or testing processes involving enzymes, nucleic acids or microorganismsCompositions thereforProcesses of preparing such compositions involving hydrolase involving peptidase or proteinase
  • C12Q 1/6806 - Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay
  • C12Q 1/6834 - Enzymatic or biochemical coupling of nucleic acids to a solid phase
  • C12Q 1/6844 - Nucleic acid amplification reactions
  • G01N 33/58 - Chemical analysis of biological material, e.g. blood, urineTesting involving biospecific ligand binding methodsImmunological testing involving labelled substances

23.

METHODS OF SEQUENCING CIRCULAR TEMPLATE POLYNUCLEOTIDES

      
Application Number 18904678
Status Pending
Filing Date 2024-10-02
First Publication Date 2025-01-23
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Witters, Daan
  • Lipson, Allen
  • Glezer, Eli N.

Abstract

Disclosed herein, inter alia, are complexes, kits, and efficient methods of sequencing two strands of a double stranded polynucleotide.

IPC Classes  ?

  • C12Q 1/6874 - Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation [SBH]

24.

DETECTING POLYNUCLEOTIDES WITH BARCODED OLIGONUCLEOTIDE PROBES

      
Application Number 18889834
Status Pending
Filing Date 2024-09-19
First Publication Date 2025-01-23
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Glezer, Eli N.
  • Fabani, Martin Maria
  • Shultzaberger, Ryan
  • Sridhar, Bharat
  • Stengel, Gudrun
  • Wei, Christopher Jen-Yue

Abstract

Provided herein are methods of detecting polynucleotides with a set of barcoded oligonucleotide probes.

IPC Classes  ?

  • C12Q 1/6853 - Nucleic acid amplification reactions using modified primers or templates
  • C12Q 1/6869 - Methods for sequencing

25.

Multiplexed targeted amplification of polynucleotides

      
Application Number 18335936
Grant Number 12188088
Status In Force
Filing Date 2023-06-15
First Publication Date 2024-12-26
Grant Date 2025-01-07
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Glezer, Eli N.
  • Witters, Daan
  • Le, Tung Thanh

Abstract

Disclosed herein, inter alia, are compositions and methods for efficient amplification and sequencing of nucleic acid templates.

IPC Classes  ?

  • C12P 19/34 - Polynucleotides, e.g. nucleic acids, oligoribonucleotides
  • B01L 3/00 - Containers or dishes for laboratory use, e.g. laboratory glasswareDroppers
  • C12Q 1/6874 - Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation [SBH]

26.

SERIAL DETECTION OF MULTIPLE TARGETS

      
Application Number 18741582
Status Pending
Filing Date 2024-06-12
First Publication Date 2024-12-26
Owner Singular Genomics Systems, Inc. (USA)
Inventor Glezer, Eli N.

Abstract

Disclosed herein, inter alia, are methods and compositions useful for detecting multiple biological targets.

IPC Classes  ?

  • G01N 33/53 - ImmunoassayBiospecific binding assayMaterials therefor
  • G01N 33/542 - ImmunoassayBiospecific binding assayMaterials therefor with immune complex formed in liquid phase with steric inhibition or signal modification, e.g. fluorescent quenching

27.

METHODS FOR MINIMIZING OPTICAL ABERRATIONS

      
Application Number 18814985
Status Pending
Filing Date 2024-08-26
First Publication Date 2024-12-19
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Glezer, Eli N.
  • Baranson, David
  • Heiner, David L.

Abstract

Disclosed herein, inter alia, are imaging systems, devices, and methods of use thereof.

IPC Classes  ?

  • G02B 21/36 - Microscopes arranged for photographic purposes or projection purposes
  • G01N 21/64 - FluorescencePhosphorescence
  • G02B 21/16 - Microscopes adapted for ultraviolet illumination
  • H04N 23/67 - Focus control based on electronic image sensor signals
  • H04N 23/695 - Control of camera direction for changing a field of view, e.g. pan, tilt or based on tracking of objects

28.

PHOTOSTABLE DETECTABLE COMPOUNDS

      
Application Number 18679036
Status Pending
Filing Date 2024-05-30
First Publication Date 2024-12-12
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Krause, Michael
  • Graham, Ronald

Abstract

Disclosed herein, inter alia, are detectable compounds including a triplet state quencher and the method of use thereof.

IPC Classes  ?

  • G01N 33/58 - Chemical analysis of biological material, e.g. blood, urineTesting involving biospecific ligand binding methodsImmunological testing involving labelled substances
  • C07D 471/04 - Ortho-condensed systems
  • C09B 23/10 - Methine or polymethine dyes, e.g. cyanine dyes characterised by the methine chain containing an even number of CH groups
  • C09K 11/06 - Luminescent, e.g. electroluminescent, chemiluminescent, materials containing organic luminescent materials

29.

NUCLEOTIDE ANALOGUES

      
Application Number 18791082
Status Pending
Filing Date 2024-07-31
First Publication Date 2024-12-05
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Graham, Ronald
  • Adelfinskaya, Olga
  • Cila, Megha
  • Rodriguez, Rodrigo
  • Abdu, Abrehet
  • Glezer, Eli N.

Abstract

Disclosed herein, inter alia, are compounds and methods of using the same for the modifying a nucleic acid molecule.

IPC Classes  ?

  • C07H 19/14 - Pyrrolo-pyrimidine radicals
  • C07H 19/10 - Pyrimidine radicals with the saccharide radical being esterified by phosphoric or polyphosphoric acids
  • C07H 19/20 - Purine radicals with the saccharide radical being esterified by phosphoric or polyphosphoric acids
  • C12Q 1/6869 - Methods for sequencing
  • C12Q 1/6876 - Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes

30.

METHODS FOR LONG READ SEQUENCING

      
Application Number 18807061
Status Pending
Filing Date 2024-08-16
First Publication Date 2024-12-05
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Glezer, Eli N.
  • Abdu, Abrehet
  • Looney, Timothy

Abstract

Provided herein are methods including alternating series of sequencing cycles and dark extension cycles allowing longer read lengths and addressing disadvantages of traditional nucleic acid sequencing protocols.

IPC Classes  ?

31.

METHODS AND COMPOSITIONS FOR REDUCING NUCLEOTIDE IMPURITIES

      
Application Number 18812056
Status Pending
Filing Date 2024-08-22
First Publication Date 2024-12-05
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Glezer, Eli N.
  • Abdu, Abrehet
  • Hale, Laura Ann
  • Li, Jiawen

Abstract

Disclosed herein, inter alia, are compositions and methods for depleting nucleotide impurities in nucleotide solutions.

IPC Classes  ?

  • C12Q 1/6874 - Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation [SBH]
  • B01L 3/00 - Containers or dishes for laboratory use, e.g. laboratory glasswareDroppers
  • C12Q 1/6806 - Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay

32.

METHODS AND PROBES FOR DETECTING POLYNUCLEOTIDE SEQUENCES IN CELLS AND TISSUES

      
Application Number US2024032152
Publication Number 2024/249961
Status In Force
Filing Date 2024-05-31
Publication Date 2024-12-05
Owner SINGULAR GENOMICS SYSTEMS, INC. (USA)
Inventor
  • Pawlowski, Andrew
  • Youn, Yeoan
  • Lawson, Michael
  • Fabani, Martin Maria

Abstract

inter aliainter alia, are compositions and methods of use thereof for detecting polynucleotides from and within cells and tissues.

IPC Classes  ?

  • C12Q 1/6841 - In situ hybridisation
  • C12Q 1/6844 - Nucleic acid amplification reactions
  • C12N 9/22 - Ribonucleases
  • C12P 19/34 - Polynucleotides, e.g. nucleic acids, oligoribonucleotides
  • C12Q 1/6806 - Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay
  • C12Q 1/6818 - Hybridisation assays characterised by the detection means involving interaction of two or more labels, e.g. resonant energy transfer
  • C12Q 1/686 - Polymerase chain reaction [PCR]
  • C12Q 1/6867 - Replicase-based amplification, e.g. using Q-beta replicase
  • C12Q 1/6869 - Methods for sequencing

33.

SPATIAL DETECTION OF CLONOTYPES IN TISSUES

      
Application Number 18797131
Status Pending
Filing Date 2024-08-07
First Publication Date 2024-11-28
Owner Singular Genomics Systems, Inc. (USA)
Inventor Glezer, Eli N.

Abstract

Disclosed herein, inter alia, are compositions and methods of use thereof for interrogating a tissue sample.

IPC Classes  ?

34.

NUCLEIC ACID CIRCULARIZATION AND AMPLIFICATION ON A SURFACE

      
Application Number 18776983
Status Pending
Filing Date 2024-07-18
First Publication Date 2024-11-28
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Witters, Daan
  • Glezer, Eli N.
  • King, Andrew
  • Shore, Sabrina
  • Shultzaberger, Ryan

Abstract

Disclosed herein, inter alia, are compositions and methods for amplification and sequencing of nucleic acids.

IPC Classes  ?

  • C12Q 1/6874 - Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation [SBH]

35.

METHODS AND COMPOSITIONS USEFUL FOR NUCLEIC ACID SEQUENCING

      
Application Number 18797267
Status Pending
Filing Date 2024-08-07
First Publication Date 2024-11-28
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Glezer, Eli N.
  • Graham, Ronald
  • Krause, Michael J.

Abstract

Disclosed herein, inter alia, are modified nucleotides and methods of using the same in nucleic acid sequencing reactions.

IPC Classes  ?

  • C12Q 1/6818 - Hybridisation assays characterised by the detection means involving interaction of two or more labels, e.g. resonant energy transfer
  • C12Q 1/6825 - Nucleic acid detection involving sensors

36.

LINKED TRANSCRIPT SEQUENCING

      
Application Number 18537540
Status Pending
Filing Date 2023-12-12
First Publication Date 2024-11-14
Owner Singular Genomics Systems, Inc. (USA)
Inventor Glezer, Eli N.

Abstract

Disclosed herein, inter alia, are compositions, methods, and kits for sequencing nucleic acid molecules, such as immune receptor transcripts.

IPC Classes  ?

  • C12Q 1/6881 - Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for tissue or cell typing, e.g. human leukocyte antigen [HLA] probes
  • C12Q 1/6844 - Nucleic acid amplification reactions
  • C12Q 1/6874 - Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation [SBH]

37.

SOLID PHASE NUCLEIC ACID AMPLIFICATION METHODS AND COMPOSITIONS

      
Application Number 18649323
Status Pending
Filing Date 2024-04-29
First Publication Date 2024-11-07
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Glezer, Eli N.
  • Witters, Daan

Abstract

Disclosed herein, inter alia, are methods and compositions for amplifying and sequencing a plurality of template nucleic acids.

IPC Classes  ?

  • C12Q 1/6874 - Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation [SBH]
  • C12Q 1/6853 - Nucleic acid amplification reactions using modified primers or templates
  • C12Q 1/6876 - Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes

38.

REDUCING AGENTS AND USES THEREOF

      
Application Number 18752325
Status Pending
Filing Date 2024-06-24
First Publication Date 2024-11-07
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Graham, Ronald
  • Terranova, Zachary

Abstract

Disclosed herein, inter alia, are reducing agents and methods of use thereof.

IPC Classes  ?

39.

Sample cartridge

      
Application Number 29913146
Grant Number D1050482
Status In Force
Filing Date 2023-09-27
First Publication Date 2024-11-05
Grant Date 2024-11-05
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Jeffrey-Coker, Bandele
  • Glezer, Eli N.
  • Hsu, Anson
  • Spivey, Cory

40.

DETECTING TUMOR INFILTRATING CELLS

      
Application Number 18769778
Status Pending
Filing Date 2024-07-11
First Publication Date 2024-10-31
Owner Singular Genomics Systems, Inc. (USA)
Inventor Glezer, Eli N.

Abstract

Disclosed herein, inter alia, are compositions and methods of use thereof for interrogating a tissue sample.

IPC Classes  ?

41.

FLOW CELL CARRIER AND METHODS OF USE

      
Application Number 18768428
Status Pending
Filing Date 2024-07-10
First Publication Date 2024-10-31
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Kovacs, Sandor
  • Hsu, Anson
  • Baranson, David
  • Van Doorn, John
  • Glezer, Eli N.

Abstract

The present disclosure relates to a flow cell carrier. The flow cell carrier may include a flow cell and a frame. The frame may include a pocket and a handle. The pocket may have at least one spring feature and at least one banking feature. The frame may be configured to retain the flow cell within the pocket such that a maximal surface area of the flow cell is exposed to an optical lens. Related methods and kits are also disclosed.

IPC Classes  ?

  • G01N 15/1404 - Handling flow, e.g. hydrodynamic focusing
  • G01N 15/01 - Investigating characteristics of particlesInvestigating permeability, pore-volume or surface-area of porous materials specially adapted for biological cells, e.g. blood cells
  • G01N 15/14 - Optical investigation techniques, e.g. flow cytometry

42.

Reagent cartridge

      
Application Number 29913142
Grant Number D1049420
Status In Force
Filing Date 2023-09-27
First Publication Date 2024-10-29
Grant Date 2024-10-29
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Jeffrey-Coker, Bandele
  • Glezer, Eli N.
  • Hsu, Anson
  • Spivey, Cory

43.

MULTIPLEXED TARGETED AMPLIFICATION FOR MUTATION DETECTION

      
Application Number 18629661
Status Pending
Filing Date 2024-04-08
First Publication Date 2024-10-17
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Glezer, Eli N.
  • Witters, Daan
  • Le, Tung Thanh

Abstract

Disclosed herein, inter alia, are compositions and methods for amplification and sequencing of nucleic acid molecules including, for example, genetic mutations.

IPC Classes  ?

  • B01L 3/00 - Containers or dishes for laboratory use, e.g. laboratory glasswareDroppers
  • C12Q 1/6806 - Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay
  • C12Q 1/6834 - Enzymatic or biochemical coupling of nucleic acids to a solid phase

44.

Reagent cartridge

      
Application Number 29913145
Grant Number D1047223
Status In Force
Filing Date 2023-09-27
First Publication Date 2024-10-15
Grant Date 2024-10-15
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Jeffrey-Coker, Bandele
  • Glezer, Eli N.
  • Hsu, Anson
  • Spivey, Cory

45.

Cleavable disulfide linkers and uses thereof

      
Application Number 18439062
Grant Number 12188089
Status In Force
Filing Date 2024-02-12
First Publication Date 2024-10-03
Grant Date 2025-01-07
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Graham, Ronald
  • Cila, Megha

Abstract

Disclosed herein, inter alia, are methods and cleavable compounds that minimize byproduct formation following cleavage.

IPC Classes  ?

  • C12Q 1/68 - Measuring or testing processes involving enzymes, nucleic acids or microorganismsCompositions thereforProcesses of preparing such compositions involving nucleic acids
  • C07H 19/10 - Pyrimidine radicals with the saccharide radical being esterified by phosphoric or polyphosphoric acids
  • C07H 19/20 - Purine radicals with the saccharide radical being esterified by phosphoric or polyphosphoric acids
  • C12Q 1/6874 - Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation [SBH]
  • C12Q 1/6876 - Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
  • C12Q 1/6806 - Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay

46.

DISULFIDE CONTAINING THERAPEUTICS AND DIAGNOSTICS

      
Application Number 18441561
Status Pending
Filing Date 2024-02-14
First Publication Date 2024-09-26
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Graham, Ronald
  • Adhikari, Surya

Abstract

Disclosed herein, inter alia, are therapeutic and theragnostic compounds and methods of use thereof.

IPC Classes  ?

  • A61K 31/4745 - QuinolinesIsoquinolines ortho- or peri-condensed with heterocyclic ring systems condensed with ring systems having nitrogen as a ring hetero atom, e.g. phenanthrolines
  • A61K 47/68 - Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additivesTargeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an antibody, an immunoglobulin or a fragment thereof, e.g. an Fc-fragment
  • C07K 16/18 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans

47.

HIGH DENSITY SEQUENCING AND MULTIPLEXED PRIMING

      
Application Number 18672510
Status Pending
Filing Date 2024-05-23
First Publication Date 2024-09-19
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Glezer, Eli N.
  • Van Wietmarschen, Niek
  • Witters, Daan

Abstract

Disclosed herein, inter alia, are methods and compositions for detecting a plurality of nucleic acids in a sample.

IPC Classes  ?

  • C12N 15/10 - Processes for the isolation, preparation or purification of DNA or RNA
  • C12Q 1/6806 - Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay
  • C12Q 1/6837 - Enzymatic or biochemical coupling of nucleic acids to a solid phase using probe arrays or probe chips
  • C12Q 1/6844 - Nucleic acid amplification reactions
  • C12Q 1/6874 - Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation [SBH]

48.

TARGETED SPATIAL SEQUENCING

      
Application Number US2024017299
Publication Number 2024/182295
Status In Force
Filing Date 2024-02-26
Publication Date 2024-09-06
Owner SINGULAR GENOMICS SYSTEMS, INC. (USA)
Inventor
  • Fabani, Martin Maria
  • Lawson, Michael

Abstract

inter aliainter alia, are oligonucleotide probes, methods, and kits useful for amplifying and detecting target nucleic acids in cells and tissues.

IPC Classes  ?

  • C12Q 1/6853 - Nucleic acid amplification reactions using modified primers or templates
  • C12Q 1/6855 - Ligating adaptors
  • C12N 15/11 - DNA or RNA fragmentsModified forms thereof
  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12N 9/22 - Ribonucleases

49.

RHODAMINE FLUORESCENT COMPOUNDS AND PRODUCTION METHODS THEREOF

      
Application Number 18435635
Status Pending
Filing Date 2024-02-07
First Publication Date 2024-09-05
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Tong, Ada
  • Cila, Megha
  • Graham, Ronald

Abstract

Disclosed herein, inter alia, are fluorescent compounds and methods of making and using thereof.

IPC Classes  ?

  • C09B 11/24 - Phthaleins containing amino groups
  • A61K 49/00 - Preparations for testing in vivo
  • C07H 19/20 - Purine radicals with the saccharide radical being esterified by phosphoric or polyphosphoric acids
  • C12Q 1/6869 - Methods for sequencing

50.

Modified PHI29 DNA polymerases and uses thereof

      
Application Number 18659585
Grant Number 12227774
Status In Force
Filing Date 2024-05-09
First Publication Date 2024-09-05
Grant Date 2025-02-18
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Naji, Souad
  • Sevy, Alexander
  • Cellitti, Jason
  • Glezer, Eli N.
  • Kutche, Bruna Krebs
  • Terranova, Zachary
  • Handa, Sumit

Abstract

Disclosed herein, inter alia, are mutant enzymes, kits, and methods of use thereof.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12Q 1/6844 - Nucleic acid amplification reactions

51.

DETECTING MOLECULES IN TISSUES

      
Application Number 18645232
Status Pending
Filing Date 2024-04-24
First Publication Date 2024-08-29
Owner Singular Genomics Systems, Inc. (USA)
Inventor Glezer, Eli N.

Abstract

Disclosed herein, inter alia, are compositions and methods of use thereof for interrogating a tissue sample.

IPC Classes  ?

52.

SILICON CONTAINING DETECTABLE COMPOUNDS AND USES THEREOF

      
Application Number 18621997
Status Pending
Filing Date 2024-03-29
First Publication Date 2024-08-22
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Cila, Megha
  • Graham, Ronald
  • Rodriguez, Rodrigo

Abstract

Disclosed herein, inter alia, are silicon containing detectable compounds and methods of use thereof. In an aspect is provided a monovalent nucleotide or monovalent nucleoside covalently bound to a monovalent form of a compound described herein (e.g., wherein the R13 moiety of a compound described herein has reacted with a bioconjugate reactive group to form a bioconjugate linker thereby covalently bonding the monovalent compound to the monovalent nucleotide or monovalent nucleoside).

IPC Classes  ?

  • C09B 62/36 - Reactive dyes, i.e. dyes which form covalent bonds with the substrates or which polymerise with themselves with the reactive group directly attached to a heterocyclic ring to some other heterocyclic ring
  • C09K 11/06 - Luminescent, e.g. electroluminescent, chemiluminescent, materials containing organic luminescent materials
  • G01N 33/58 - Chemical analysis of biological material, e.g. blood, urineTesting involving biospecific ligand binding methodsImmunological testing involving labelled substances

53.

Device for tissue section immobilization and retention

      
Application Number 18623376
Grant Number 12181388
Status In Force
Filing Date 2024-04-01
First Publication Date 2024-08-22
Grant Date 2024-12-31
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Ishitsuka, Yuji
  • Hong, Zhenmin
  • Glezer, Eli N.
  • Cang, Hu
  • Dempsey, William
  • Ding, Weiqiao
  • Koh, Jaekyung
  • Varnosfaderani, Mohammad Vatankhah

Abstract

Disclosed herein, inter alia, are devices and methods for transfer and analyses of tissue sections using carrier substrates.

IPC Classes  ?

  • G01N 1/00 - SamplingPreparing specimens for investigation
  • A61L 27/28 - Materials for coating prostheses
  • A61L 27/52 - Hydrogels or hydrocolloids
  • C12Q 1/6841 - In situ hybridisation
  • C12Q 1/6874 - Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation [SBH]
  • G01N 1/06 - Devices for withdrawing samples in the solid state, e.g. by cutting providing a thin slice, e.g. microtome
  • G01N 1/28 - Preparing specimens for investigation
  • G01N 1/30 - StainingImpregnating
  • G01N 1/31 - Apparatus therefor
  • G01N 1/36 - Embedding or analogous mounting of samples
  • G01N 23/2251 - Investigating or analysing materials by the use of wave or particle radiation, e.g. X-rays or neutrons, not covered by groups , or by measuring secondary emission from the material using electron or ion microprobes using incident electron beams, e.g. scanning electron microscopy [SEM]
  • G02B 21/34 - Microscope slides, e.g. mounting specimens on microscope slides

54.

Methods of amplifying circular polynucleotides in situ

      
Application Number 18588765
Grant Number 12110550
Status In Force
Filing Date 2024-02-27
First Publication Date 2024-08-15
Grant Date 2024-10-08
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Witters, Daan
  • Lipson, Allen
  • Glezer, Eli N.

Abstract

Disclosed herein, inter alia, are complexes, kits, and efficient methods of sequencing two strands of a double stranded polynucleotide.

IPC Classes  ?

  • C12Q 1/68 - Measuring or testing processes involving enzymes, nucleic acids or microorganismsCompositions thereforProcesses of preparing such compositions involving nucleic acids
  • C12Q 1/6874 - Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation [SBH]

55.

NUCLEOTIDE CLEAVABLE LINKERS AND USES THEREOF

      
Application Number 18598995
Status Pending
Filing Date 2024-03-07
First Publication Date 2024-08-15
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Graham, Ronald
  • Adelfinskaya, Olga
  • Cila, Megha
  • Rodriguez, Rodrigo

Abstract

Disclosed herein, inter alia, are compounds, compositions, and methods of use thereof for sequencing a nucleic acid.

IPC Classes  ?

  • C12Q 1/6869 - Methods for sequencing
  • C07F 9/655 - Heterocyclic compounds, e.g. containing phosphorus as a ring hetero atom having oxygen atoms, with or without sulfur, selenium, or tellurium atoms, as the only ring hetero atoms
  • C07H 19/06 - Pyrimidine radicals
  • C07H 19/10 - Pyrimidine radicals with the saccharide radical being esterified by phosphoric or polyphosphoric acids
  • C07H 19/14 - Pyrrolo-pyrimidine radicals
  • C07H 19/16 - Purine radicals
  • C07H 19/20 - Purine radicals with the saccharide radical being esterified by phosphoric or polyphosphoric acids
  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12Q 1/6806 - Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay

56.

METHODS FOR DIFFERENTIATING MODIFIED NUCLEOBASES

      
Application Number 18592127
Status Pending
Filing Date 2024-02-29
First Publication Date 2024-08-15
Owner Singular Genomics Systems, Inc. (USA)
Inventor Glezer, Eli N.

Abstract

Disclosed herein, inter alia, are compositions, methods, and kits useful for detecting nucleobase modifications on one or both strands of a double-stranded nucleic acid fragment.

IPC Classes  ?

  • C12Q 1/6874 - Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation [SBH]
  • C12Q 1/34 - Measuring or testing processes involving enzymes, nucleic acids or microorganismsCompositions thereforProcesses of preparing such compositions involving hydrolase
  • C12Q 1/48 - Measuring or testing processes involving enzymes, nucleic acids or microorganismsCompositions thereforProcesses of preparing such compositions involving transferase

57.

DISULFIDE CONTAINING THERAPEUTICS

      
Application Number 18543979
Status Pending
Filing Date 2023-12-18
First Publication Date 2024-08-15
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Graham, Ronald
  • Adhikari, Surya

Abstract

Disclosed herein, inter alia, are methods and compounds including cleavable moieties, and methods of use thereof.

IPC Classes  ?

  • A61K 31/704 - Compounds having saccharide radicals attached to non-saccharide compounds by glycosidic linkages attached to a carbocyclic compound, e.g. phloridzin attached to a condensed carbocyclic ring system, e.g. sennosides, thiocolchicosides, escin, daunorubicin, digitoxin
  • A61K 31/337 - Heterocyclic compounds having oxygen as the only ring hetero atom, e.g. fungichromin having four-membered rings, e.g. taxol
  • A61K 31/4745 - QuinolinesIsoquinolines ortho- or peri-condensed with heterocyclic ring systems condensed with ring systems having nitrogen as a ring hetero atom, e.g. phenanthrolines
  • A61K 31/5355 - Non-condensed oxazines containing further heterocyclic rings
  • A61K 31/7068 - Compounds having saccharide radicals and heterocyclic rings having nitrogen as a ring hetero atom, e.g. nucleosides, nucleotides containing six-membered rings with nitrogen as a ring hetero atom containing condensed or non-condensed pyrimidines having oxo groups directly attached to the pyrimidine ring, e.g. cytidine, cytidylic acid

58.

METHODS AND DEVICES FOR MANIPULATING BIOLOGICAL SAMPLES

      
Application Number US2024013802
Publication Number 2024/163634
Status In Force
Filing Date 2024-01-31
Publication Date 2024-08-08
Owner SINGULAR GENOMICS SYSTEMS, INC. (USA)
Inventor
  • Ishitsuka, Yuji
  • Koh, Jaekyung
  • Stover, Robert James
  • Shekhtmeyster, Pavel
  • Kovacs, Sandor
  • Cang, Hu
  • Rascon, Valeria

Abstract

inter aliainter alia, are devices and methods for efficient transfer and analyses of cellular material, tissue samples, such as tissue sections, using carrier substrates and devices.

IPC Classes  ?

  • G01N 1/28 - Preparing specimens for investigation
  • G01N 1/06 - Devices for withdrawing samples in the solid state, e.g. by cutting providing a thin slice, e.g. microtome
  • G02B 21/34 - Microscope slides, e.g. mounting specimens on microscope slides

59.

SPLIT OLIGONUCLEOTIDE PARTNER PROBES

      
Application Number 18608603
Status Pending
Filing Date 2024-03-18
First Publication Date 2024-08-08
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Lawson, Michael
  • Berrios, Christian
  • Fabani, Martin Maria

Abstract

Disclosed herein, inter alia, are polynucleotide probes, methods, and kits useful for amplifying and detecting target nucleic acids.

IPC Classes  ?

  • C12Q 1/6841 - In situ hybridisation
  • C12Q 1/6818 - Hybridisation assays characterised by the detection means involving interaction of two or more labels, e.g. resonant energy transfer

60.

PROXIMITY OLIGONUCLEOTIDES AND METHODS OF USE THEREOF

      
Application Number 18390642
Status Pending
Filing Date 2023-12-20
First Publication Date 2024-08-01
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Lawson, Michael
  • Glezer, Eli N.

Abstract

Disclosed herein, inter alia, are oligonucleotides, methods, and kits useful for amplifying and detecting target nucleic acids.

IPC Classes  ?

  • C12Q 1/6841 - In situ hybridisation
  • C12Q 1/6844 - Nucleic acid amplification reactions
  • C12Q 1/6874 - Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation [SBH]

61.

TARGETING OLIGONUCLEOTIDES AND METHODS OF USE THEREOF

      
Application Number 18390463
Status Pending
Filing Date 2023-12-20
First Publication Date 2024-08-01
Owner Singular Genomics Systems, Inc. (USA)
Inventor Lawson, Michael

Abstract

Disclosed herein, inter alia, are oligonucleotides, methods, and kits useful for amplifying and detecting targets such as nucleic acids, proteins, and carbohydrates.

IPC Classes  ?

  • C12Q 1/6841 - In situ hybridisation
  • C12Q 1/6874 - Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation [SBH]

62.

Manipulating and detecting biological samples

      
Application Number 18430467
Grant Number 12158402
Status In Force
Filing Date 2024-02-01
First Publication Date 2024-07-18
Grant Date 2024-12-03
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Ishitsuka, Yuji
  • Hong, Zhenmin
  • Glezer, Eli N.
  • Cang, Hu
  • Dempsey, William
  • Ding, Weiqiao
  • Koh, Jaekyung
  • Varnosfaderani, Mohammad Vatankhah

Abstract

Disclosed herein, inter alia, are compositions and methods for efficient transfer and analyses of cellular material, tissue samples, such as tissue sections, using carrier substrates.

IPC Classes  ?

  • G01N 1/10 - Devices for withdrawing samples in the liquid or fluent state
  • A61L 27/28 - Materials for coating prostheses
  • A61L 27/52 - Hydrogels or hydrocolloids
  • C12Q 1/6841 - In situ hybridisation
  • C12Q 1/6874 - Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation [SBH]
  • G01N 1/06 - Devices for withdrawing samples in the solid state, e.g. by cutting providing a thin slice, e.g. microtome
  • G01N 1/28 - Preparing specimens for investigation
  • G01N 1/30 - StainingImpregnating
  • G01N 1/31 - Apparatus therefor
  • G01N 1/36 - Embedding or analogous mounting of samples
  • G01N 23/2251 - Investigating or analysing materials by the use of wave or particle radiation, e.g. X-rays or neutrons, not covered by groups , or by measuring secondary emission from the material using electron or ion microprobes using incident electron beams, e.g. scanning electron microscopy [SEM]
  • G02B 21/34 - Microscope slides, e.g. mounting specimens on microscope slides

63.

MULTIPLEXED TARGETED AMPLIFICATION OF POLYNUCLEOTIDES

      
Application Number 18584749
Status Pending
Filing Date 2024-02-22
First Publication Date 2024-07-18
Owner Singular Genomics Systems, Inc (USA)
Inventor
  • Glezer, Eli N.
  • Witters, Daan
  • Le, Tung Thanh

Abstract

Disclosed herein, inter alia, are compositions and methods for efficient amplification and sequencing of nucleic acid templates.

IPC Classes  ?

  • C12Q 1/6874 - Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation [SBH]
  • B01L 3/00 - Containers or dishes for laboratory use, e.g. laboratory glasswareDroppers

64.

CONTROLLED ROLLING CIRCLE AMPLIFICATION

      
Application Number 18537266
Status Pending
Filing Date 2023-12-12
First Publication Date 2024-07-11
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Que, Richard
  • Fabani, Martin Maria
  • Hong, Zhenmin
  • Lawson, Michael

Abstract

Disclosed herein, inter alia, are methods and compositions for improved circular polynucleotide amplification and detection.

IPC Classes  ?

65.

MULTI-PART OLIGONUCLEOTIDE PROBES AND METHODS OF USE THEREOF

      
Application Number 18390804
Status Pending
Filing Date 2023-12-20
First Publication Date 2024-07-11
Owner Singular Genomics Systems, Inc. (USA)
Inventor Lawson, Michael

Abstract

Disclosed herein, inter alia, are oligonucleotides, methods, and kits useful for amplifying and detecting targets such as nucleic acids, proteins, and carbohydrates.

IPC Classes  ?

  • C12Q 1/682 - Signal amplification
  • C12Q 1/6876 - Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes

66.

Modified Pyrococcus Polymerases and Uses Thereof

      
Application Number 18540158
Status Pending
Filing Date 2023-12-14
First Publication Date 2024-06-20
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Naji, Souad
  • Glezer, Eli N.
  • Cho, Youngjin
  • Terranova, Zachary
  • Abdu, Abrehet

Abstract

Provided herein are modified Archaeal family B polymerases derived from species of the Archaeal microorganism Pyrococcus that exhibit improved incorporation of nucleotide analogues utilized in DNA sequencing.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12N 15/63 - Introduction of foreign genetic material using vectorsVectorsUse of hosts thereforRegulation of expression
  • C12Q 1/6874 - Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation [SBH]

67.

Multiport disconnect couplings

      
Application Number 18588971
Grant Number 12345363
Status In Force
Filing Date 2024-02-27
First Publication Date 2024-06-20
Grant Date 2025-07-01
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Kovacs, Sandor
  • Baranson, David

Abstract

A connector assembly is configured to fluidly and removably connect a first set of microtubes to a second set of microtubes of a microfluidic device. The connector assembly provides multiple points of contact to the microtubes to provide a secure connection between the connector assembly and the microtubes. A single gasket provides a securely aligned connection between microtubes.

IPC Classes  ?

  • F16L 39/00 - Joints or fittings for double-walled or multi-channel pipes or pipe assemblies
  • F16L 37/56 - Couplings of the quick-acting type for double-walled or multi-channel pipes

68.

Methods for in situ transcriptomics and proteomics

      
Application Number 18443079
Grant Number 12286666
Status In Force
Filing Date 2024-02-15
First Publication Date 2024-06-06
Grant Date 2025-04-29
Owner SINGULAR GENOMICS SYSTEMS, INC. (USA)
Inventor
  • Glezer, Eli N.
  • Cang, Hu
  • Hong, Zhenmin

Abstract

Disclosed herein, inter alia, are compositions and methods of use thereof for interrogating a cell.

IPC Classes  ?

69.

Pyrococcus enzymes and uses thereof

      
Application Number 18505972
Grant Number 12344867
Status In Force
Filing Date 2023-11-09
First Publication Date 2024-06-06
Grant Date 2025-07-01
Owner SINGULAR GENOMICS SYSTEMS, INC. (USA)
Inventor
  • Naji, Souad
  • Glezer, Eli N.
  • Cho, Youngjin
  • Terranova, Zachary
  • Abdu, Abrehet

Abstract

Pyrococcus that exhibit improved incorporation of nucleotide analogues utilized in DNA sequencing.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12N 15/63 - Introduction of foreign genetic material using vectorsVectorsUse of hosts thereforRegulation of expression
  • C12Q 1/6874 - Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation [SBH]

70.

Nucleotide analogues

      
Application Number 18522886
Grant Number 12215122
Status In Force
Filing Date 2023-11-29
First Publication Date 2024-05-30
Grant Date 2025-02-04
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Graham, Ronald
  • Adelfinskaya, Olga
  • Cila, Megha
  • Rodriguez, Rodrigo
  • Abdu, Abrehet
  • Glezer, Eli N.

Abstract

Disclosed herein, inter alia, are compounds, compositions, and methods of using the same for the sequencing of a nucleic acid.

IPC Classes  ?

  • C12Q 1/68 - Measuring or testing processes involving enzymes, nucleic acids or microorganismsCompositions thereforProcesses of preparing such compositions involving nucleic acids
  • C07H 19/10 - Pyrimidine radicals with the saccharide radical being esterified by phosphoric or polyphosphoric acids
  • C07H 19/14 - Pyrrolo-pyrimidine radicals
  • C07H 19/20 - Purine radicals with the saccharide radical being esterified by phosphoric or polyphosphoric acids
  • C12Q 1/6869 - Methods for sequencing
  • C12Q 1/6876 - Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes

71.

MULTI-DIMENSIONAL POLYMER SCAFFOLDS FOR NUCLEIC ACID ANALYSES

      
Application Number 18490491
Status Pending
Filing Date 2023-10-19
First Publication Date 2024-05-23
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Glezer, Eli N.
  • Witters, Daan

Abstract

Disclosed herein, inter alia, are compositions and methods for detecting polynucleotides within a three-dimensional matrix.

IPC Classes  ?

  • C12Q 1/6874 - Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation [SBH]

72.

NANOARRAYS AND METHODS OF USE THEREOF

      
Application Number 18511510
Status Pending
Filing Date 2023-11-16
First Publication Date 2024-05-23
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Glezer, Eli N.
  • Karimkhani, Vahid
  • Kay, Shahed
  • Varnosfaderani, Mohammad Vatankhah
  • Witters, Daan

Abstract

Disclosed herein, inter alia, are nanoarrays and methods of use thereof.

IPC Classes  ?

  • C12Q 1/6874 - Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation [SBH]
  • C12Q 1/6876 - Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
  • C40B 40/06 - Libraries containing nucleotides or polynucleotides, or derivatives thereof

73.

METHODS AND COMPOSITIONS FOR SEQUENCING COMPLEMENTARY POLYNUCLEOTIDES

      
Application Number 18413603
Status Pending
Filing Date 2024-01-16
First Publication Date 2024-05-16
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Witters, Daan
  • Glezer, Eli N.
  • Lipson, Allen

Abstract

Disclosed herein, inter alia, are substrates, kits, and efficient methods of preparing and sequencing two or more regions of a double-stranded polynucleotide.

IPC Classes  ?

  • C12Q 1/6869 - Methods for sequencing
  • C12Q 1/6834 - Enzymatic or biochemical coupling of nucleic acids to a solid phase

74.

LINKED PAIRED STRAND SEQUENCING

      
Application Number 18412289
Status Pending
Filing Date 2024-01-12
First Publication Date 2024-05-09
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Glezer, Eli N.
  • Fabani, Martin Maria
  • Shore, Sabrina
  • Witters, Daan

Abstract

Provided herein are methods for sequencing both strands of a double stranded nucleic acid fragment that improves fidelity and accuracy of a sequence determination compared to traditional next generation sequencing methods. Compositions and kits for use in the methods are also provided.

IPC Classes  ?

75.

G4X

      
Application Number 1784615
Status Registered
Filing Date 2024-01-30
Registration Date 2024-01-30
Owner Singular Genomics Systems, Inc. (USA)
NICE Classes  ?
  • 01 - Chemical and biological materials for industrial, scientific and agricultural use
  • 05 - Pharmaceutical, veterinary and sanitary products
  • 09 - Scientific and electric apparatus and instruments

Goods & Services

Kits comprised of assays, buffers, enzymes, nucleotides, proteins, reagents, nucleic acids, oligonucleotides, chemical preparations, and biological compounds for use in connection with cellular analysis, tissue analysis, protein analysis, lipid analysis, carbohydrate analysis, genomic testing, genotyping, sequencing, and analysis for scientific and research purposes and for clinical or medical laboratory use. Kits comprised of assays, reagents, nucleic acid, proteins, oligonucleotides, chemical preparations, and biological compounds for use in connection with cellular analysis, tissue analysis, protein analysis, lipid analysis, carbohydrate analysis, genomic testing, sequencing, and analysis for medical diagnostic, clinical medical and medical purposes. Laboratory devices for imaging cells and tissues for detecting, measuring, testing, and analyzing proteins, biomolecules, cellular components, nucleic acid molecules, and genetic sequences; downloadable computer software for use in testing, sequencing, and analysis of biomolecules, DNA, and genomes, sold as an integral component of laboratory apparatuses.

76.

MODIFIED ENZYMES AND USES THEREOF

      
Application Number US2023075838
Publication Number 2024/076991
Status In Force
Filing Date 2023-10-03
Publication Date 2024-04-11
Owner SINGULAR GENOMICS SYSTEMS, INC. (USA)
Inventor
  • Naji, Souad
  • Sevy, Alexander M.
  • Cellitti, Jason
  • Kutche, Bruna Krebs
  • Terranova, Zachary

Abstract

Disclosed herein, inter alia, are mutant DNA polymerase enzymes, kits, and methods of use thereof. Specifically, the mutant DNA polymerases exhibit point mutations at amino acid residues such as L216, preferably L216P. The methods detail incorporation of variant nucleotides into the polymerase sequences and amplification of template polynucleotides by the resulting mutant polymerases.

IPC Classes  ?

  • C12N 9/22 - Ribonucleases
  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12P 19/34 - Polynucleotides, e.g. nucleic acids, oligoribonucleotides
  • C12Q 1/6844 - Nucleic acid amplification reactions

77.

MODIFIED ARCHAEAL FAMILY B POLYMERASES

      
Application Number 18500785
Status Pending
Filing Date 2023-11-02
First Publication Date 2024-03-28
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Naji, Souad
  • Fuller, Carl W.
  • Glezer, Eli N.
  • Spaventa, Andrew

Abstract

Provided herein are modified Archaeal family B polymerases derived from the Archaeal microorganism Pyrococcus abyssi that exhibit improved incorporation of nucleotide analogues utilized in DNA sequencing.

IPC Classes  ?

  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12P 19/34 - Polynucleotides, e.g. nucleic acids, oligoribonucleotides

78.

AMPLIFICATION OLIGONUCLEOTIDES

      
Application Number 18507761
Status Pending
Filing Date 2023-11-13
First Publication Date 2024-03-21
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Shultzaberger, Ryan
  • Lipson, Allen
  • Witters, Daan

Abstract

Disclosed herein, inter alia, are polynucleotides, supports, kits, and methods of use thereof for amplifying, immobilizing, and sequencing polynucleotides.

IPC Classes  ?

  • C12Q 1/6855 - Ligating adaptors
  • C12Q 1/6874 - Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation [SBH]
  • C12Q 1/6876 - Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes

79.

METHODS FOR INCREASING MONOCLONAL NUCLEIC ACID AMPLIFICATION PRODUCTS

      
Application Number 18459086
Status Pending
Filing Date 2023-08-31
First Publication Date 2024-03-21
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Looney, Timothy
  • Berrios, Christian

Abstract

Disclosed herein, inter alia, are methods and compositions useful for increasing monoclonal nucleic acid amplification products on a solid support.

IPC Classes  ?

  • C12Q 1/6874 - Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation [SBH]
  • C12Q 1/6844 - Nucleic acid amplification reactions

80.

Flow cell receiver and methods of use

      
Application Number 18483259
Grant Number 12179208
Status In Force
Filing Date 2023-10-09
First Publication Date 2024-02-22
Grant Date 2024-12-31
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Kovacs, Sandor
  • Baranson, David
  • Glezer, Eli N.

Abstract

The present disclosure relates to a flow cell receiver. The flow cell receiver can include at least one platen, having a plurality of ports. The flow cell receiver can include magnets. The flow cell receiver can be configured to automatically align, secure, and retain a flow cell carrier containing a flow cell.

IPC Classes  ?

  • B01L 9/00 - Supporting devicesHolding devices

81.

COMPETITIVE METHODS AND COMPOSITIONS FOR AMPLIFYING POLYNUCLEOTIDES

      
Application Number 18364849
Status Pending
Filing Date 2023-08-03
First Publication Date 2024-02-15
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Witters, Daan
  • Glezer, Eli N.

Abstract

Disclosed herein, inter alia, are methods for increasing monoclonal nucleic acid amplification products on a solid support.

IPC Classes  ?

  • C12Q 1/6844 - Nucleic acid amplification reactions
  • C12Q 1/6834 - Enzymatic or biochemical coupling of nucleic acids to a solid phase

82.

TETHERED DETECTION ASSAYS

      
Application Number 18365476
Status Pending
Filing Date 2023-08-04
First Publication Date 2024-02-08
Owner Singular Genomics Systems, Inc. (USA)
Inventor Glezer, Eli N.

Abstract

Disclosed herein, inter alia, are compositions, complexes, and methods useful for efficient multiplex assays.

IPC Classes  ?

  • G01N 33/543 - ImmunoassayBiospecific binding assayMaterials therefor with an insoluble carrier for immobilising immunochemicals
  • G01N 33/58 - Chemical analysis of biological material, e.g. blood, urineTesting involving biospecific ligand binding methodsImmunological testing involving labelled substances

83.

METHODS FOR IMPROVING STRAND INVASION EFFICIENCY

      
Application Number US2023071692
Publication Number 2024/031061
Status In Force
Filing Date 2023-08-04
Publication Date 2024-02-08
Owner SINGULAR GENOMICS SYSTEMS, INC. (USA)
Inventor
  • King, Andrew
  • Witters, Daan

Abstract

inter aliainter alia, are substrates, kits, and efficient methods of preparing and sequencing a double-stranded polynucleotide.

IPC Classes  ?

  • C12Q 1/6869 - Methods for sequencing
  • C12Q 1/6848 - Nucleic acid amplification reactions characterised by the means for preventing contamination or increasing the specificity or sensitivity of an amplification reaction
  • C12Q 1/6853 - Nucleic acid amplification reactions using modified primers or templates
  • C12Q 1/6806 - Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay

84.

METHODS AND COMPOSITIONS FOR AMPLIFYING POLYNUCLEOTIDES

      
Application Number 18357850
Status Pending
Filing Date 2023-07-24
First Publication Date 2024-02-01
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Witters, Daan
  • Glezer, Eli N.

Abstract

Disclosed herein, inter alia, are methods for increasing monoclonal nucleic acid amplification products on a solid support.

IPC Classes  ?

85.

IMAGING SYSTEMS AND METHODS USEFUL FOR SIGNAL EXTRACTION

      
Application Number 18363611
Status Pending
Filing Date 2023-08-01
First Publication Date 2024-02-01
Owner Singular Genomics Systems, Inc. (USA)
Inventor Trintchouk, Fedor

Abstract

Disclosed herein, inter alia, are methods and systems of image analysis useful for identifying and/or quantifying features in patterns.

IPC Classes  ?

86.

IMAGING SYSTEMS AND METHODS USEFUL FOR PATTERNED STRUCTURES

      
Application Number 18474627
Status Pending
Filing Date 2023-09-26
First Publication Date 2024-02-01
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Trintchouk, Fedor
  • Glezer, Eli N.

Abstract

Disclosed herein, inter alia, are methods and systems of image analysis useful for identifying and/or quantifying features in patterns.

IPC Classes  ?

  • G06T 7/00 - Image analysis
  • G16B 30/00 - ICT specially adapted for sequence analysis involving nucleotides or amino acids
  • G06T 3/00 - Geometric image transformations in the plane of the image
  • G06T 7/33 - Determination of transform parameters for the alignment of images, i.e. image registration using feature-based methods

87.

Microplate assembly

      
Application Number 29840220
Grant Number D1013205
Status In Force
Filing Date 2022-05-26
First Publication Date 2024-01-30
Grant Date 2024-01-30
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Jeffrey-Coker, Bandele J.
  • Glezer, Eli N.
  • Ishitsuka, Yuji

88.

Microplate assembly

      
Application Number 29840219
Grant Number D1013204
Status In Force
Filing Date 2022-05-26
First Publication Date 2024-01-30
Grant Date 2024-01-30
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Jeffrey-Coker, Bandele J.
  • Glezer, Eli N.
  • Ishitsuka, Yuji

89.

In situ detection of nucleic acid molecules

      
Application Number 18469871
Grant Number 12286667
Status In Force
Filing Date 2023-09-19
First Publication Date 2024-01-25
Grant Date 2025-04-29
Owner SINGULAR GENOMICS SYSTEMS, INC. (USA)
Inventor
  • Glezer, Eli N.
  • Cang, Hu
  • Hong, Zhenmin

Abstract

Disclosed herein, inter alia, are compositions and methods of use thereof for interrogating a cell.

IPC Classes  ?

90.

Microplate

      
Application Number 29840218
Grant Number D1010856
Status In Force
Filing Date 2022-05-26
First Publication Date 2024-01-09
Grant Date 2024-01-09
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Jeffrey-Coker, Bandele J.
  • Glezer, Eli N.
  • Ishitsuka, Yuji

91.

SPATIAL DETECTION OF BIOMOLECULE INTERACTIONS

      
Application Number 18339628
Status Pending
Filing Date 2023-06-22
First Publication Date 2023-12-28
Owner Singular Genomics Systems, Inc. (USA)
Inventor Berrios, Christian

Abstract

Disclosed herein, inter alia, are compositions and methods for spatial detection of biomolecular interactions.

IPC Classes  ?

92.

NUCLEIC ACID SEQUENCING-BY-SYNTHESIS (SBS) METHODS THAT COMBINE SBS CYCLE STEPS

      
Application Number 18457790
Status Pending
Filing Date 2023-08-29
First Publication Date 2023-12-28
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Glezer, Eli N.
  • Spaventa, Andrew
  • Barker, David

Abstract

The present disclosure provides improved nucleic acid sequencing-by-synthesis (SBS) methods, related kits and reagents, and systems for performing such methods using such kits and reagents.

IPC Classes  ?

  • C12Q 1/6869 - Methods for sequencing
  • C07H 21/04 - Compounds containing two or more mononucleotide units having separate phosphate or polyphosphate groups linked by saccharide radicals of nucleoside groups, e.g. nucleic acids with deoxyribosyl as saccharide radical
  • C12Q 1/6867 - Replicase-based amplification, e.g. using Q-beta replicase

93.

Cleavable disulfide linkers and uses thereof

      
Application Number 18449601
Grant Number 11946103
Status In Force
Filing Date 2023-08-14
First Publication Date 2023-12-21
Grant Date 2024-04-02
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Graham, Ronald
  • Cila, Megha

Abstract

Disclosed herein, inter alia, are methods and cleavable compounds that minimize byproduct formation following cleavage.

IPC Classes  ?

  • C12Q 1/68 - Measuring or testing processes involving enzymes, nucleic acids or microorganismsCompositions thereforProcesses of preparing such compositions involving nucleic acids
  • C07H 19/10 - Pyrimidine radicals with the saccharide radical being esterified by phosphoric or polyphosphoric acids
  • C07H 19/20 - Purine radicals with the saccharide radical being esterified by phosphoric or polyphosphoric acids
  • C12Q 1/6874 - Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation [SBH]
  • C12Q 1/6876 - Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
  • C12Q 1/6806 - Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay

94.

DIRECT-SEQ

      
Application Number 1766324
Status Registered
Filing Date 2023-10-25
Registration Date 2023-10-25
Owner Singular Genomics Systems, Inc. (USA)
NICE Classes  ?
  • 01 - Chemical and biological materials for industrial, scientific and agricultural use
  • 42 - Scientific, technological and industrial services, research and design

Goods & Services

Kits comprising of assays, buffers, enzymes, nucleotides, reagents, nucleic acids, oligonucleotides, chemical preparations, solid support substrates, and biological compounds for use in connection with sample preparation, cellular analysis, protein and proteomic analysis, genomic expression, genomic testing, genotyping, sequencing, and analysis for scientific and research purposes. Scientific testing in the field of analysis, detecting and sequencing of biomolecules, DNA, and genomes for research purposes; providing medical research and scientific research and information in the field of testing, analysis, gene expression, cellular analysis, protein and proteomic analysis, and sequencing of biomolecules, DNA, RNA and genomes.

95.

NUCLEIC ACID DELIVERY SCAFFOLDS

      
Application Number 18455954
Status Pending
Filing Date 2023-08-25
First Publication Date 2023-12-14
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Kalaj, Mark
  • Witters, Daan

Abstract

Disclosed herein, inter alia, are degradable nanoparticles, nanoarrays, and methods of use thereof in nucleic acid sequencing.

IPC Classes  ?

  • C12Q 1/6874 - Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation [SBH]

96.

Lid for a reagent cartridge

      
Application Number 29869464
Grant Number D1007002
Status In Force
Filing Date 2022-12-30
First Publication Date 2023-12-05
Grant Date 2023-12-05
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Jeffrey-Coker, Bandele
  • Glezer, Eli N.
  • Hsu, Anson
  • Spivey, Cory

97.

Flow cell carrier device

      
Application Number 18354542
Grant Number 12066370
Status In Force
Filing Date 2023-07-18
First Publication Date 2023-11-30
Grant Date 2024-08-20
Owner Singular Genomics Systems, Inc. (Canada)
Inventor
  • Kovacs, Sandor
  • Hsu, Anson
  • Baranson, David
  • Van Doorn, John
  • Glezer, Eli N.

Abstract

The present disclosure relates to a flow cell carrier. The flow cell carrier may include a flow cell and a frame. The frame may include a pocket and a handle. The pocket may have at least one spring feature and at least one banking feature. The frame may be configured to retain the flow cell within the pocket such that a maximal surface area of the flow cell is exposed to an optical lens. Related methods and kits are also disclosed.

IPC Classes  ?

  • G01N 15/1404 - Handling flow, e.g. hydrodynamic focusing
  • G01N 15/01 - Investigating characteristics of particlesInvestigating permeability, pore-volume or surface-area of porous materials specially adapted for biological cells, e.g. blood cells
  • G01N 15/14 - Optical investigation techniques, e.g. flow cytometry

98.

Multiomic analysis device and methods of use thereof

      
Application Number 18352957
Grant Number 12252740
Status In Force
Filing Date 2023-07-14
First Publication Date 2023-11-23
Grant Date 2025-03-18
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Kovacs, Sandor
  • Glezer, Eli N.
  • Frye, Christopher

Abstract

A device comprising: a sample stage configured to be coupled to a microplate receiver; a microplate receiver configured to be coupled to a microplate; at least one heating element thermally coupled to the microplate receiver; a fluidics dispenser configured to dispense one or more reagents into the microplate; and an imaging system configured to detect one or more features in the microplate; and a structure physically coupled to the sample stage, the heating element, the fluidics dispenser, and the imaging system.

IPC Classes  ?

99.

G4X

      
Serial Number 98280946
Status Pending
Filing Date 2023-11-21
Owner Singular Genomics Systems, Inc. ()
NICE Classes  ?
  • 01 - Chemical and biological materials for industrial, scientific and agricultural use
  • 05 - Pharmaceutical, veterinary and sanitary products
  • 09 - Scientific and electric apparatus and instruments

Goods & Services

Kits comprised of assays, buffers, enzymes, nucleotides, proteins, reagents, nucleic acids, oligonucleotides, chemical preparations, and biological compounds for use in connection with cellular analysis, tissue analysis, protein analysis, lipid analysis, carbohydrate analysis, genomic testing, genotyping, sequencing, and analysis for scientific and research purposes and for clinical or medical laboratory use Kits comprised of assays, reagents, nucleic acid, proteins, oligonucleotides, chemical preparations, and biological compounds for use in connection with cellular analysis, tissue analysis, protein analysis, lipid analysis, carbohydrate analysis, genomic testing, sequencing, and analysis for medical diagnostic, clinical medical and medical purposes Laboratory devices for imaging cells and tissues for detecting, measuring, testing, and analyzing proteins, biomolecules, cellular components, nucleic acid molecules, and genetic sequences; Downloadable computer software for use in testing, sequencing, and analysis of biomolecules, DNA, and genomes, sold as an integral component of laboratory apparatuses

100.

Sample cartridge

      
Application Number 29884564
Grant Number D1005517
Status In Force
Filing Date 2023-02-13
First Publication Date 2023-11-21
Grant Date 2023-11-21
Owner Singular Genomics Systems, Inc. (USA)
Inventor
  • Jeffrey-Coker, Bandele
  • Glezer, Eli N.
  • Hsu, Anson
  • Spivey, Cory
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