Synlogic Operating Company, Inc.

United States of America

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IPC Class
A61K 35/74 - Bacteria 65
C12N 15/70 - Vectors or expression systems specially adapted for E. coli 59
A61K 35/741 - Probiotics 50
C12N 9/88 - Lyases (4.) 34
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1.

RECOMBINANT BACTERIA ENGINEERED TO TREAT DISEASES ASSOCIATED WITH METHIONINE METABOLISM AND METHODS OF USE THEREOF

      
Application Number US2024039515
Publication Number 2025/024642
Status In Force
Filing Date 2024-07-25
Publication Date 2025-01-30
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Gao, Jian-Rong
  • Means, Jillian, Marie

Abstract

The present disclosure provides host cells, e.g., bacterial cells, that comprise a methionine decarboxylase enzyme for the treatment of diseases and disorders associated with methionine metabolism in a subject. The disclosure further provides pharmaceutical compositions and methods of treating disorders associated with methionine metabolism, such as homocystinuria.

IPC Classes  ?

  • C12N 9/88 - Lyases (4.)
  • C07K 14/36 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from bacteria from ActinomycesPeptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from bacteria from Streptomyces (G)
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12N 15/76 - Vectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora for ActinomycesVectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora for Streptomyces

2.

ENGINEERED PHENYLALANINE AMMONIA LYASE ENZYMES

      
Application Number 18690104
Status Pending
Filing Date 2022-09-08
First Publication Date 2024-12-26
Owner
  • Ginkgo Bioworks, Inc. (USA)
  • Synlogic Operating Company, Inc. (USA)
Inventor
  • Carlin, Dylan Alexander
  • Hecht, Ariel
  • Isablella, Vincent
  • Mcmurry, Jonathan Lewis
  • Monahan, Catherine
  • Reppas, Nikos
  • Ridley, Christan
  • Schmidt, Nathan W.

Abstract

Aspects of the disclosure relate to phenylalanine ammonia lyase (PAL) enzymes, including engineered PAL enzymes, and their use in catalyzing chemical reactions. Aspects of the disclosure relate to phenylalanine ammonia lyase (PAL) enzymes, including engineered PAL enzymes, and their use in catalyzing chemical reactions.

IPC Classes  ?

  • C12N 9/88 - Lyases (4.)
  • A61K 38/51 - Lyases (4)
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli
  • C12P 7/40 - Preparation of oxygen-containing organic compounds containing a carboxyl group

3.

BACTERIA ENGINEERED TO TREAT A DISEASE OR DISORDER

      
Application Number 18537897
Status Pending
Filing Date 2023-12-13
First Publication Date 2024-11-21
Owner Synlogic Operating Company, Inc. (USA)
Inventor
  • Falb, Dean
  • Miller, Paul F.
  • Kotula, Jonathan W.
  • Isabella, Vincent M.
  • Machinani, Suman
  • Fisher, Adam B.
  • Millet, Yves

Abstract

Genetically programmed microorganisms, such as bacteria, pharmaceutical compositions thereof, and methods of modulating and treating a disease and/or disorder are disclosed.

IPC Classes  ?

  • A61K 35/74 - Bacteria
  • A61K 35/00 - Medicinal preparations containing materials or reaction products thereof with undetermined constitution
  • A61K 35/741 - Probiotics
  • A61K 38/00 - Medicinal preparations containing peptides
  • A61K 39/02 - Bacterial antigens
  • C07K 14/195 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from bacteria
  • C07K 14/245 - Escherichia (G)
  • C12N 9/06 - Oxidoreductases (1.), e.g. luciferase acting on nitrogen containing compounds as donors (1.4, 1.5, 1.7)
  • C12N 9/88 - Lyases (4.)
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli

4.

BACTERIA FOR THE TREATMENT OF DISORDERS

      
Application Number 18512389
Status Pending
Filing Date 2023-11-17
First Publication Date 2024-11-07
Owner Synlogic Operating Company, Inc. (USA)
Inventor
  • Falb, Dean
  • Fisher, Adam B.
  • Isabella, Vincent M.
  • Kotula, Jonathan W.
  • Lubkowicz, David
  • Miller, Paul F.
  • Millet, Yves
  • Rowe, Sarah Elizabeth

Abstract

Modified probiotics, pharmaceutical compositions thereof, and methods of modulating and treating disorders are disclosed.

IPC Classes  ?

  • C12N 1/20 - BacteriaCulture media therefor
  • A61K 9/00 - Medicinal preparations characterised by special physical form
  • A61K 35/74 - Bacteria
  • A61K 35/741 - Probiotics
  • C07K 14/245 - Escherichia (G)
  • C12N 15/63 - Introduction of foreign genetic material using vectorsVectorsUse of hosts thereforRegulation of expression
  • C12Q 1/527 - Measuring or testing processes involving enzymes, nucleic acids or microorganismsCompositions thereforProcesses of preparing such compositions involving lyase

5.

MICROORGANISMS ENGINEERED TO REDUCE HYPERPHENYLALANINEMIA

      
Application Number 18270102
Status Pending
Filing Date 2021-12-17
First Publication Date 2024-09-26
Owner Synlogic Operating Company, Inc. (USA)
Inventor
  • Adolfsen, Kristin
  • Greisen, Per
  • Callihan, Isolde
  • Lawrence, Adam
  • Spoonamore, James
  • Koniecza, Jay
  • Monahan, Catherine
  • Isabella, Vincent M.
  • Lubkowicz, David

Abstract

Genetically engineered bacteria, pharmaceutical compositions thereof, and methods of modulating and treating diseases associated with hyperphenylalaninemia are disclosed.

IPC Classes  ?

  • A61K 35/741 - Probiotics
  • A61P 3/00 - Drugs for disorders of the metabolism
  • C12N 9/06 - Oxidoreductases (1.), e.g. luciferase acting on nitrogen containing compounds as donors (1.4, 1.5, 1.7)
  • C12N 9/88 - Lyases (4.)
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli

6.

METHODS OF TREATING CANCER USING RECOMBINANT MICROORGANISMS EXPRESSING A STING AGONIST

      
Application Number 18271714
Status Pending
Filing Date 2022-01-11
First Publication Date 2024-09-26
Owner Synlogic Operating Company, Inc. (USA)
Inventor
  • Sokolovska, Anna
  • Brennan, Aoife

Abstract

Therapies comprising a recombinant microorganism expressing a STING agonist, and methods of modulating and treating cancers are disclosed.

IPC Classes  ?

  • A61K 35/741 - Probiotics
  • A61K 39/00 - Medicinal preparations containing antigens or antibodies
  • A61K 39/395 - AntibodiesImmunoglobulinsImmune serum, e.g. antilymphocytic serum
  • C07K 16/28 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
  • C12N 1/20 - BacteriaCulture media therefor
  • C12N 9/48 - Hydrolases (3.) acting on peptide bonds, e.g. thromboplastin, leucine aminopeptidase (3.4)
  • C12R 1/19 - Escherichia coli

7.

RECOMBINANT BACTERIA FOR USE IN THE TREATMENT OF DISORDERS IN WHICH OXALATE IS DETRIMENTAL

      
Application Number US2023084033
Publication Number 2024/129974
Status In Force
Filing Date 2023-12-14
Publication Date 2024-06-20
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor Kurtz, Caroline

Abstract

The present disclosure provides recombinant bacterial cells comprising at least one heterologous gene encoding at least one oxalate catabolism enzyme. In another aspect, the recombinant bacterial cells further comprise at least one heterologous gene encoding an importer of oxalate. The disclosure further provides pharmaceutical compositions comprising the recombinant bacteria, and methods for treating disorders in which oxalate is detrimental, such as hyperoxaluria, using the pharmaceutical compositions of the disclosure.

IPC Classes  ?

  • A61K 35/741 - Probiotics
  • A61P 1/14 - Prodigestives, e.g. acids, enzymes, appetite stimulants, antidyspeptics, tonics, antiflatulents
  • A61P 1/18 - Drugs for disorders of the alimentary tract or the digestive system for pancreatic disorders, e.g. pancreatic enzymes

8.

BACTERIA ENGINEERED TO TREAT DISORDERS IN WHICH OXALATE IS DETRIMENTAL

      
Application Number 18283268
Status Pending
Filing Date 2022-03-24
First Publication Date 2024-06-20
Owner Synlogic Operating Company, Inc. (USA)
Inventor
  • Isabella, Vincent M.
  • Lubkowicz, David
  • James, Michael
  • Kurtz, Caroline

Abstract

The present invention provides recombinant bacterial cells comprising at least one heterologous gene encoding at least one oxalate catabolism enzyme. In another aspect, the recombinant bacterial cells further comprise at least one heterologous gene encoding an importer of oxalate. The invention further provides pharmaceutical compositions comprising the recombinant bacteria, and methods for treating disorders in which oxalate is detrimental, such as hyperoxaluria, using the pharmaceutical compositions of the invention.

IPC Classes  ?

  • A61K 38/53 - Ligases (6)
  • A61K 31/4439 - Non-condensed pyridinesHydrogenated derivatives thereof containing further heterocyclic ring systems containing a five-membered ring with nitrogen as a ring hetero atom, e.g. omeprazole
  • A61K 35/00 - Medicinal preparations containing materials or reaction products thereof with undetermined constitution
  • A61K 35/741 - Probiotics
  • A61K 38/45 - Transferases (2)
  • A61K 38/51 - Lyases (4)
  • A61P 13/04 - Drugs for disorders of the urinary system for urolithiasis
  • C12N 9/00 - Enzymes, e.g. ligases (6.)ProenzymesCompositions thereofProcesses for preparing, activating, inhibiting, separating, or purifying enzymes
  • C12N 9/10 - Transferases (2.)
  • C12N 9/88 - Lyases (4.)
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli

9.

BACTERIA ENGINEERED TO SECRETE ACTIVE PROTEINS

      
Application Number 18286661
Status Pending
Filing Date 2022-04-12
First Publication Date 2024-06-13
Owner Synlogic Operating Company, Inc. (USA)
Inventor
  • Kalantari, Aida
  • Kenny, Douglas
  • Reeves, Analise Zaunbrecher
  • James, Michael
  • Charbonneau, Mark

Abstract

Recombinant bacteria capable of producing and secreting therapeutically active EGF, pharmaceutical compositions thereof, and methods of treating disorders are disclosed.

IPC Classes  ?

  • C12N 1/20 - BacteriaCulture media therefor
  • A61K 35/00 - Medicinal preparations containing materials or reaction products thereof with undetermined constitution
  • C07K 14/245 - Escherichia (G)
  • C07K 14/485 - Epidermal growth factor [EGF], i.e. urogastrone
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli
  • C12R 1/19 - Escherichia coli

10.

MICROORGANISMS PROGRAMMED TO PRODUCE IMMUNE MODULATORS AND ANTI-CANCER THERAPEUTICS IN TUMOR CELLS

      
Application Number 18326637
Status Pending
Filing Date 2023-05-31
First Publication Date 2024-06-06
Owner Synlogic Operating Company, Inc. (USA)
Inventor
  • Falb, Dean
  • Kotula, Jonathan W.
  • Isabella, Vincent M.
  • Miller, Paul F.
  • Machinani, Suman
  • Saha, Saurabh
  • Fisher, Adam B.
  • Millet, Yves
  • Li, Ning

Abstract

Genetically programmed microorganisms, such as bacteria or virus, pharmaceutical compositions thereof, and methods of modulating and treating cancers are disclosed.

IPC Classes  ?

  • A61K 35/74 - Bacteria
  • A61K 31/00 - Medicinal preparations containing organic active ingredients
  • A61K 38/19 - CytokinesLymphokinesInterferons
  • A61K 38/20 - Interleukins
  • A61K 39/395 - AntibodiesImmunoglobulinsImmune serum, e.g. antilymphocytic serum
  • A61K 48/00 - Medicinal preparations containing genetic material which is inserted into cells of the living body to treat genetic diseasesGene therapy
  • A61P 35/00 - Antineoplastic agents
  • C07K 14/245 - Escherichia (G)
  • C07K 14/335 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from bacteria from Lactobacillus (G)
  • C07K 14/34 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from bacteria from Corynebacterium (G)
  • C07K 14/535 - Granulocyte CSFGranulocyte-macrophage CSF
  • C07K 14/54 - Interleukins [IL]
  • C07K 14/55 - IL-2
  • C07K 16/28 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
  • C12N 5/00 - Undifferentiated human, animal or plant cells, e.g. cell linesTissuesCultivation or maintenance thereofCulture media therefor
  • C12N 15/00 - Mutation or genetic engineeringDNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purificationUse of hosts therefor
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli
  • C12P 13/22 - TryptophanTyrosinePhenylalanine3,4-Dihydroxyphenylalanine
  • C12P 21/02 - Preparation of peptides or proteins having a known sequence of two or more amino acids, e.g. glutathione

11.

RECOMBINANT BACTERIA EXPRESSING PHENYLALANINE AMMONIA LYASE, PHENYLALANINE TRANSPORTER AND L- AMINOACID DEAMINASE FOR REDUCING HYPERPHENYLALANINEMIA

      
Application Number US2023077060
Publication Number 2024/086557
Status In Force
Filing Date 2023-10-17
Publication Date 2024-04-25
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Brennan, Aoife
  • Kurtz, Caroline
  • Puurunen, Marja
  • Sondheimer, Neal

Abstract

Methods of modulating and treating diseases associated with hyperphenylalaninemia are disclosed.

IPC Classes  ?

  • C12N 9/06 - Oxidoreductases (1.), e.g. luciferase acting on nitrogen containing compounds as donors (1.4, 1.5, 1.7)
  • C12N 9/88 - Lyases (4.)
  • A61P 3/00 - Drugs for disorders of the metabolism
  • A61K 48/00 - Medicinal preparations containing genetic material which is inserted into cells of the living body to treat genetic diseasesGene therapy
  • A61P 3/02 - Nutrients, e.g. vitamins, minerals
  • C07K 14/435 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from animalsPeptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from humans
  • A61K 35/74 - Bacteria

12.

BACTERIA ENGINEERED TO PRODUCE ACTIVE EPIDERMAL GROWTH FACTOR (EGF) AND THEIR MEDICAL USES

      
Application Number US2023076665
Publication Number 2024/081768
Status In Force
Filing Date 2023-10-12
Publication Date 2024-04-18
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Shu, Chengyi, Jenny
  • Kenny, Douglas
  • Chao, Chun, Cheih

Abstract

Recombinant bacteria capable of producing and secreting therapeutically active epidermal growth factor (EGF), pharmaceutical compositions thereof, and methods of treating disorders are disclosed.

IPC Classes  ?

13.

ENGINEERED MICROORGANISMS

      
Application Number 18265002
Status Pending
Filing Date 2021-12-02
First Publication Date 2024-04-04
Owner Synlogic Operating Company, Inc. (USA)
Inventor
  • James, Michael
  • Kalantari, Aida
  • Mirabella, Tea
  • Renaud, Lauren
  • Kristensen, Lee
  • Isabella, Vincent

Abstract

The present invention relates to engineered microorganisms, wherein the engineered microorganisms comprise a therapeutic molecule and a modified pks island.

IPC Classes  ?

14.

BACTERIA ENGINEERED TO TREAT DISEASES THAT BENEFIT FROM REDUCED GUT INFLAMMATION AND/OR TIGHTENED GUT MUCOSAL BARRIER

      
Application Number 18195694
Status Pending
Filing Date 2023-05-10
First Publication Date 2024-04-04
Owner Synlogic Operating Company, Inc. (USA)
Inventor
  • Falb, Dean
  • Isabella, Vincent M.
  • Kotula, Jonathan W.
  • Miller, Paul F.
  • Millet, Yves
  • Fisher, Adam

Abstract

Genetically engineered bacteria, pharmaceutical compositions thereof, and methods of treating or preventing autoimmune disorders, inhibiting inflammatory mechanisms in the gut, and/or tightening gut mucosal barrier function are disclosed.

IPC Classes  ?

15.

RECOMBINANT BACTERIA ENGINEERED TO TREAT DISEASES ASSOCIATED WITH METHIONINE METABOLISM AND METHODS OF USE THEREOF

      
Application Number 18524651
Status Pending
Filing Date 2023-11-30
First Publication Date 2024-03-28
Owner
  • Synlogic Operating Company, Inc. (USA)
  • Ginkgo Bioworks, Inc. (USA)
Inventor
  • Carlin, Dylan Alexander
  • Isabella, Vincent M.
  • Mcmurry, Jonathan
  • Moore, Iii, Theodore Carlton
  • Perreault, Mylene
  • Schmidt, Nathan
  • Simon, Mark

Abstract

The present disclosure provides host cells, e.g., bacterial cells, that comprise a methionine decarboxylase enzyme for the treatment of diseases and disorders associated with methionine metabolism in a subject. The disclosure further provides pharmaceutical compositions and methods of treating disorders associated with methionine metabolism, such as homocystinuria.

IPC Classes  ?

16.

Microorganisms engineered to reduce hyperphenylalaninemia

      
Application Number 18446970
Grant Number 12171790
Status In Force
Filing Date 2023-08-09
First Publication Date 2024-03-14
Grant Date 2024-12-24
Owner Synlogic Operating Company, Inc. (USA)
Inventor
  • Adolfsen, Kristin
  • Greisen, Per
  • Callihan, Isolde
  • Lawrence, Adam
  • Spoonamore, James
  • Konieczka, Jay

Abstract

Genetically engineered bacteria, pharmaceutical compositions thereof, and methods of modulating and treating diseases associated with hyperphenylalaninemia are disclosed.

IPC Classes  ?

  • A61K 35/74 - Bacteria
  • A61K 9/00 - Medicinal preparations characterised by special physical form
  • A61P 3/00 - Drugs for disorders of the metabolism

17.

BACTERIA ENGINEERED TO REDUCE HYPERPHENYLALANINEMIA

      
Application Number 18068004
Status Pending
Filing Date 2022-12-19
First Publication Date 2024-03-07
Owner Synlogic Operating Company, Inc. (USA)
Inventor
  • Falb, Dean
  • Isabella, Vincent M.
  • Kotula, Jonathan W.
  • Miller, Paul F.
  • Rowe, Sarah
  • Millet, Yves

Abstract

Genetically engineered bacteria, pharmaceutical compositions thereof, and methods of modulating and treating diseases associated with hyperphenylalaninemia are disclosed.

IPC Classes  ?

  • C12N 9/88 - Lyases (4.)
  • A61K 35/74 - Bacteria
  • A61K 35/741 - Probiotics
  • A61P 7/00 - Drugs for disorders of the blood or the extracellular fluid
  • C12N 9/78 - Hydrolases (3.) acting on carbon to nitrogen bonds other than peptide bonds (3.5)
  • C12Q 1/527 - Measuring or testing processes involving enzymes, nucleic acids or microorganismsCompositions thereforProcesses of preparing such compositions involving lyase

18.

RECOMBINANT BACTERIA ENGINEERED TO TREAT DISEASES ASSOCIATED WITH METHIONINE METABOLISM AND METHODS OF USE THEREOF

      
Document Number 03260276
Status Pending
Filing Date 2023-06-23
Open to Public Date 2023-12-28
Owner
  • Michael JAMES (USA)
  • Aoife BRENNAN (USA)
  • Neal SONDHEIMER (USA)
  • SYNLOGIC OPERATING COMPANY, INC. (USA)
  • David LUBKOWICZ (USA)
  • Caroline KURTZ (USA)
Inventor
  • Sondheimer, Neal
  • Kurtz, Caroline
  • Lubkowicz, David
  • James, Michael
  • Brennan, Aoife

IPC Classes  ?

19.

RECOMBINANT BACTERIA ENGINEERED TO TREAT DISEASES ASSOCIATED WITH METHIONINE METABOLISM AND METHODS OF USE THEREOF

      
Application Number US2023068978
Publication Number 2023/250478
Status In Force
Filing Date 2023-06-23
Publication Date 2023-12-28
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Brennan, Aoife
  • Kurtz, Caroline
  • Sondheimer, Neal
  • James, Michael
  • Lubkowicz, David

Abstract

The present disclosure provides recombinant bacterial cells that have been engineered with genetic circuitry which allow the recombinant bacterial cells to sense a patient' s internal environment and respond by turning an engineered metabolic pathway on or off. When turned on, the recombinant bacterial cells complete all of the steps in a metabolic pathway to achieve a therapeutic effect in a host subject. These recombinant bacterial cells are designed to drive therapeutic effects throughout the body of a host from a point of origin of the microbiome. Specifically, the present disclosure provides recombinant bacterial cells that comprise a methionine decarboxylase enzyme for the treatment of diseases and disorders associated with amino acid metabolism, including homocystinuria, in a subject. The disclosure further provides pharmaceutical compositions and methods of treating disorders associated with amino acid metabolism, such as homocystinuria

IPC Classes  ?

20.

BACTERIA ENGINEERED TO TREAT DISEASES ASSOCIATED WITH BILE ACID METABOLISM AND METHODS OF USE THEREOF

      
Application Number US2023068583
Publication Number 2023/245168
Status In Force
Filing Date 2023-06-16
Publication Date 2023-12-21
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • James, Michael
  • Shah, Abhi

Abstract

The present disclosure provides recombinant bacterial cells that have been engineered with genetic circuitry which allow the recombinant bacterial cells to sense a patient's internal environment and respond by turning an engineered metabolic pathway on or off. When turned on, the recombinant bacterial cells complete all of the steps in a metabolic pathway to achieve a therapeutic effect in a host subject. These recombinant bacterial cells are designed to drive therapeutic effects throughout the body of a host from a point of origin of the microbiome. Specifically, the present disclosure provides recombinant bacterial cells that comprise a bile acid catabolism enzyme for the treatment of diseases and disorders associated with bile acid metabolism, such as inflammatory bowel disease. The disclosure further provides pharmaceutical compositions and methods of treating disorders associated with bile acid metabolism, such as inflammatory bowel disease.

IPC Classes  ?

  • C07K 14/245 - Escherichia (G)
  • A61K 9/00 - Medicinal preparations characterised by special physical form
  • A61K 35/741 - Probiotics
  • C07K 14/32 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from bacteria from Bacillus (G)
  • C12N 9/10 - Transferases (2.)
  • C12N 9/16 - Hydrolases (3.) acting on ester bonds (3.1)

21.

BACTERIA ENGINEERED TO TREAT DISEASES ASSOCIATED WITH BILE ACID METABOLISM AND METHODS OF USE THEREOF

      
Application Number US2023068591
Publication Number 2023/245171
Status In Force
Filing Date 2023-06-16
Publication Date 2023-12-21
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Means, Jillian, Marie
  • Kenny, Douglas
  • Shu, Chengyi, Jenny
  • Sarvestani, Afrand, Kamali
  • James, Michael
  • Shah, Abhi

Abstract

The present disclosure provides recombinant bacterial cells that have been engineered with genetic circuitry which allow the recombinant bacterial cells to sense a patient's internal environment and respond by turning an engineered metabolic pathway on or off. When turned on, the recombinant bacterial cells complete all of the steps in a metabolic pathway to achieve a therapeutic effect in a host subject. These recombinant bacterial cells are designed to drive therapeutic effects throughout the body of a host from a point of origin of the microbiome. Specifically, the present disclosure provides recombinant bacterial cells that comprise a bile acid catabolism enzyme for the treatment of diseases and disorders associated with bile acid metabolism, such as inflammatory bowel disease. The disclosure further provides pharmaceutical compositions and methods of treating disorders associated with bile acid metabolism, such as inflammatory bowel disease.

IPC Classes  ?

  • A61K 35/741 - Probiotics
  • A61K 35/742 - Spore-forming bacteria, e.g. Bacillus coagulans, Bacillus subtilis, clostridium or Lactobacillus sporogenes
  • A61P 3/00 - Drugs for disorders of the metabolism
  • C12N 9/04 - Oxidoreductases (1.), e.g. luciferase acting on CHOH groups as donors, e.g. glucose oxidase, lactate dehydrogenase (1.1)
  • C12N 9/02 - Oxidoreductases (1.), e.g. luciferase
  • C12N 9/80 - Hydrolases (3.) acting on carbon to nitrogen bonds other than peptide bonds (3.5) acting on amide bonds in linear amides

22.

RECOMBINANT BACTERIA FOR PRODUCTION OF INDOLE-3-ACETIC ACID (IAA) AND USES THEREOF

      
Application Number US2023067262
Publication Number 2023/225667
Status In Force
Filing Date 2023-05-19
Publication Date 2023-11-23
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Shu, Chengyi, Jenny
  • Chao, Chun-Cheih

Abstract

The present disclosure provides recombinant bacteria for production of indole -3 -acetic acid (IAA). Pharmaceutical compositions and methods of treating diseases are also included.

IPC Classes  ?

  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli
  • A61K 31/19 - Carboxylic acids, e.g. valproic acid
  • A61K 38/20 - Interleukins

23.

BACTERIA ENGINEERED TO SECRETE ACTIVE PROTEINS

      
Application Number 18028785
Status Pending
Filing Date 2021-09-30
First Publication Date 2023-10-19
Owner Synlogic Operating Company, Inc. (USA)
Inventor
  • Falb, Dean
  • Isabella, Vincent M.
  • Miller, Paul F.
  • Fisher, Adam B.
  • Li, Ning
  • Lora, Jose M.

Abstract

Recombinant bacteria capable of producing effector molecules, which are secreted as therapeutically active polypeptides, pharmaceutical compositions thereof, and methods of treating or preventing autoimmune disorders, cancer and/or metabolic diseases, are disclosed.

IPC Classes  ?

  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli
  • C07K 14/54 - Interleukins [IL]

24.

RECOMBINANT BACTERIA FOR PRODUCTION OF D-LACTATE AND/OR L-LACTATE AND USES THEREOF

      
Application Number 18019383
Status Pending
Filing Date 2021-08-06
First Publication Date 2023-09-21
Owner
  • Synlogic Operating Company, Inc. (USA)
  • The Brigham and Women's Hospital, Inc. (USA)
Inventor
  • Li, Ning
  • Sokolovska, Anna
  • Quintana, Francisco
  • Sanmarco, Liliana

Abstract

The present disclosure provides recombinant bacteria for production of D-lactate and/or L-lactate. Pharmaceutical compositions and methods of treating diseases are also included in the present invention.

IPC Classes  ?

  • A61K 35/745 - Bifidobacteria
  • C12N 9/10 - Transferases (2.)
  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12N 9/04 - Oxidoreductases (1.), e.g. luciferase acting on CHOH groups as donors, e.g. glucose oxidase, lactate dehydrogenase (1.1)
  • C12P 7/56 - Lactic acid
  • A61K 35/742 - Spore-forming bacteria, e.g. Bacillus coagulans, Bacillus subtilis, clostridium or Lactobacillus sporogenes
  • A61K 35/741 - Probiotics
  • A61K 35/747 - Lactobacilli, e.g. L. acidophilus or L. brevis
  • A61K 35/744 - Lactic acid bacteria, e.g. enterococci, pediococci, lactococci, streptococci or leuconostocs

25.

MICROORGANISMS PROGRAMMED TO PRODUCE IMMUNE MODULATORS AND ANTI-CANCER THERAPEUTICS IN TUMOR CELLS

      
Application Number 17879559
Status Pending
Filing Date 2022-08-02
First Publication Date 2023-07-20
Owner Synlogic Operating Company, Inc. (USA)
Inventor
  • Falb, Dean
  • Kotula, Jonathan W.
  • Isabella, Vincent M.
  • Miller, Paul F.
  • Machinani, Suman
  • Saha, Saurabh
  • Fisher, Adam B.
  • Millet, Yves
  • Li, Ning
  • Lora, Jose M.

Abstract

Genetically programmed microorganisms, such as bacteria or virus, pharmaceutical compositions thereof, and methods of modulating and treating cancers are disclosed.

IPC Classes  ?

  • A61K 35/74 - Bacteria
  • C07K 14/52 - CytokinesLymphokinesInterferons
  • C07K 14/525 - Tumour necrosis factor [TNF]
  • C07K 14/53 - Colony-stimulating factor [CSF]
  • C07K 14/54 - Interleukins [IL]
  • C07K 14/57 - IFN-gamma
  • C07K 14/705 - ReceptorsCell surface antigensCell surface determinants
  • C07K 16/28 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
  • C12N 9/26 - Hydrolases (3.) acting on glycosyl compounds (3.2) acting on alpha-1, 4-glucosidic bonds, e.g. hyaluronidase, invertase, amylase
  • C12N 15/62 - DNA sequences coding for fusion proteins
  • C12N 15/74 - Vectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora

26.

RECOMBINANT BACTERIA FOR USE AS A VACCINE TO PREVENT COVID19 INFECTION

      
Application Number 17917057
Status Pending
Filing Date 2021-04-07
First Publication Date 2023-06-15
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Gao, Jian-Rong
  • Kurtz, Caroline
  • Sokolovska, Anna
  • Li, Ning

Abstract

Modified microorganisms, pharmaceutical compositions thereof, and methods of preventing and treating the coronavirus disease 2019 (COVID-19) are disclosed.

IPC Classes  ?

  • C07K 14/005 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from viruses
  • A61K 39/215 - Coronaviridae, e.g. avian infectious bronchitis virus
  • A61P 31/14 - Antivirals for RNA viruses

27.

BACTERIA ENGINEERED TO TREAT DISORDERS INVOLVING THE CATABOLISM OF LEUCINE

      
Application Number 17912111
Status Pending
Filing Date 2021-03-17
First Publication Date 2023-06-08
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor Li, Ning

Abstract

The present disclosure provides recombinant bacterial cells that have been engineered with genetic circuitry which allow the recombinant bacterial cells to sense a patient’s internal environment and respond by turning an engineered metabolic pathway on or off. When turned on, the recombinant bacterial cells complete all of the steps in a metabolic pathway to achieve a therapeutic effect in a host subject. These recombinant bacterial cells are designed to drive therapeutic effects throughout the body of a host from a point of origin of the microbiome. Specifically, the present disclosure provides recombinant bacterial cells comprising a heterologous gene encoding an improved leucine catabolism enzyme with higher activity and/or specificity for leucine. The disclosure further provides pharmaceutical compositions comprising the recombinant bacteria, and methods for treating disorders involving the catabolism of leucine using the pharmaceutical compositions disclosed herein.

IPC Classes  ?

  • C12N 1/20 - BacteriaCulture media therefor
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • A61P 3/00 - Drugs for disorders of the metabolism

28.

RECOMBINANT BACTERIA FOR PRODUCTION OF INDOLE-3-ACETIC ACID (IAA) AND USES THEREOF

      
Application Number 17923955
Status Pending
Filing Date 2021-05-26
First Publication Date 2023-06-08
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Li, Ning
  • Gao, Jian-Rong
  • Bergeron, Christopher George

Abstract

The present disclosure provides recombinant bacteria for production of indole-3-acetic acid (IAA). Pharmaceutical compositions and methods of treating diseases are also included.

IPC Classes  ?

  • A61K 35/74 - Bacteria
  • C12N 1/20 - BacteriaCulture media therefor
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli
  • C12P 17/10 - Nitrogen as only ring hetero atom
  • C12N 9/06 - Oxidoreductases (1.), e.g. luciferase acting on nitrogen containing compounds as donors (1.4, 1.5, 1.7)
  • C12N 9/10 - Transferases (2.)
  • C12N 9/88 - Lyases (4.)
  • A61P 3/00 - Drugs for disorders of the metabolism

29.

RECOMBINANT BACTERIA ENGINEERED TO TREAT DISEASES ASSOCIATED WITH URIC ACID AND METHODS OF USE THEREOF

      
Application Number 17801854
Status Pending
Filing Date 2021-02-25
First Publication Date 2023-04-06
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Isabella, Vincent M.
  • Cotton, Sean
  • Gao, Jian-Rong
  • Mirabella, Teodelinda
  • Bergeron, Christopher George

Abstract

The present disclosure provides recombinant bacterial cells that have been engineered with genetic circuitry which allow the recombinant bacterial cells to sense a patient's internal environment and respond by turning an engineered metabolic pathway on or off. When turned on, the recombinant bacterial cells complete all of the steps in a metabolic pathway to achieve a therapeutic effect in a host subject. These recombinant bacterial cells are designed to drive therapeutic effects throughout the body of a host from a point of origin of the microbiome. Specifically, the present disclosure provides recombinant bacterial cells that comprise a uric acid catabolism enzyme, e.g., a uric acid degrading enzyme, for the treatment of diseases and disorders associated with uric acid, including hyperuricemia and gout, in a subject. The disclosure further provides pharmaceutical compositions and methods of treating disorders associated with uric acid, such as hyperuricemia.

IPC Classes  ?

  • A61K 35/74 - Bacteria
  • C12N 15/63 - Introduction of foreign genetic material using vectorsVectorsUse of hosts thereforRegulation of expression
  • C12N 9/06 - Oxidoreductases (1.), e.g. luciferase acting on nitrogen containing compounds as donors (1.4, 1.5, 1.7)
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli
  • A61K 38/44 - Oxidoreductases (1)
  • A61P 19/06 - Antigout agents, e.g. antihyperuricemic or uricosuric agents

30.

BACTERIA ENGINEERED TO TREAT DISORDERS IN WHICH OXALATE IS DETRIMENTAL

      
Application Number 17792030
Status Pending
Filing Date 2021-01-14
First Publication Date 2023-03-23
Owner Synlogic Operating Company, Inc. (USA)
Inventor
  • Isabella, Vincent M.
  • Lubkowicz, David
  • James, Michael

Abstract

The present invention provides recombinant bacterial cells comprising at least one heterologous gene encoding at least one oxalate catabolism enzyme. In another aspect, the recombinant bacterial cells further comprise at least one heterologous gene encoding an importer of oxalate. The invention further provides pharmaceutical compositions comprising the recombinant bacteria, and methods for treating disorders in which oxalate is detrimental, such as hyperoxaluria, using the pharmaceutical compositions of the invention.

IPC Classes  ?

  • A61K 35/74 - Bacteria
  • C12N 9/00 - Enzymes, e.g. ligases (6.)ProenzymesCompositions thereofProcesses for preparing, activating, inhibiting, separating, or purifying enzymes
  • C12N 9/88 - Lyases (4.)
  • C12N 9/10 - Transferases (2.)
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli
  • A61K 31/4439 - Non-condensed pyridinesHydrogenated derivatives thereof containing further heterocyclic ring systems containing a five-membered ring with nitrogen as a ring hetero atom, e.g. omeprazole
  • A61P 13/12 - Drugs for disorders of the urinary system of the kidneys
  • A61P 3/00 - Drugs for disorders of the metabolism

31.

RECOMBINANT BACTERIA ENGINEERED TO TREAT DISEASES ASSOCIATED WITH METHIONINE METABOLISM AND METHODS OF USE THEREOF

      
Application Number 17798586
Status Pending
Filing Date 2021-02-12
First Publication Date 2023-03-23
Owner Synlogic Operating Company, Inc. (USA)
Inventor
  • Isabella, Vincent M.
  • Cotton, Sean

Abstract

The present disclosure provides recombinant bacterial cells that have been engineered with genetic circuitry which allow the recombinant bacterial cells to sense a patient's internal environment and respond by turning an engineered metabolic pathway on or off. When turned on, the recombinant bacterial cells complete all of the steps in a metabolic pathway to achieve a therapeutic effect in a host subject. These recombinant bacterial cells are designed to drive therapeutic effects throughout the body of a host from a point of origin of the microbiome. Specifically, the present disclosure provides recombinant bacterial cells that comprise an amino acid catabolism enzyme, e.g., a methionine catabolism enzyme for the treatment of diseases and disorders associated with amino acid metabolism, including homocystinuria, in a subject. The disclosure further provides pharmaceutical compositions and methods of treating disorders associated with amino acid metabolism, such as homocystinuria.

IPC Classes  ?

32.

METHODS FOR REDUCING HYPERPHENYLALANINEMIA

      
Application Number US2022076648
Publication Number 2023/044479
Status In Force
Filing Date 2022-09-19
Publication Date 2023-03-23
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Brennan, Aoife
  • Kurtz, Caroline
  • Puurunen, Marja

Abstract

Methods of modulating and treating diseases associated with hyperphenylalaninemia are disclosed.

IPC Classes  ?

  • A61K 38/16 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof
  • A61P 3/02 - Nutrients, e.g. vitamins, minerals
  • A61K 48/00 - Medicinal preparations containing genetic material which is inserted into cells of the living body to treat genetic diseasesGene therapy
  • C12N 15/00 - Mutation or genetic engineeringDNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purificationUse of hosts therefor
  • A61K 35/74 - Bacteria
  • A61K 38/44 - Oxidoreductases (1)
  • A61K 38/51 - Lyases (4)

33.

ENGINEERED PHENYLALANINE AMMONIA LYASE ENZYMES

      
Application Number US2022076103
Publication Number 2023/039466
Status In Force
Filing Date 2022-09-08
Publication Date 2023-03-16
Owner
  • GINKGO BIOWORKS, INC. (USA)
  • SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Carlin, Dylan, Alexander
  • Hecht, Ariel
  • Isabella, Vincent
  • Mcmurry, Jon
  • Monahan, Catherine
  • Reppas, Nikos
  • Ridley, Christian
  • Schmidt, Nathan, W.

Abstract

Aspects of the disclosure relate to phenylalanine ammonia lyase (PAL) enzymes, including engineered PAL enzymes, and their use in catalyzing chemical reactions.

IPC Classes  ?

34.

RECOMBINANT CELLS FOR TREATING DISEASES ASSOCIATED WITH URIC ACID AND METHODS OF USE THEREOF

      
Application Number US2022075820
Publication Number 2023/034904
Status In Force
Filing Date 2022-09-01
Publication Date 2023-03-09
Owner
  • SYNLOGIC OPERATING COMPANY, INC. (USA)
  • GINKGO BIOWORKS, INC. (USA)
Inventor
  • Carlin, Dylan Alexander
  • Cotton, Sean
  • Hartsough, Lucas
  • Isabella, Vincent M.
  • Jain, Rishi
  • Moore, Theodore Carlton, Iii
  • Perreault, Mylene
  • Praveschotinunt, Pichet
  • Ritter, Seth
  • Tatli, Mehmet

Abstract

e.g.e.g., a uric acid degrading enzyme, for the treatment of diseases and disorders associated with uric acid, including hyperuricemia and gout, in a subject. The disclosure further provides pharmaceutical compositions and methods of treating disorders associated with uric acid, such as hyperuricemia and gout.

IPC Classes  ?

  • C12N 9/00 - Enzymes, e.g. ligases (6.)ProenzymesCompositions thereofProcesses for preparing, activating, inhibiting, separating, or purifying enzymes
  • A61K 38/44 - Oxidoreductases (1)

35.

Recombinant bacteria engineered to treat diseases associated with methionine metabolism and methods of use thereof

      
Application Number 17819086
Grant Number 11859189
Status In Force
Filing Date 2022-08-11
First Publication Date 2023-03-02
Grant Date 2024-01-02
Owner
  • Synlogic Operating Company, Inc. (USA)
  • Ginkgo Bioworks, Inc. (USA)
Inventor
  • Carlin, Dylan Alexander
  • Isabella, Vincent M.
  • Mcmurry, Jonathan
  • Moore, Iii, Theodore Carlton
  • Perreault, Mylene
  • Schmidt, Nathan
  • Simon, Mark

Abstract

The present disclosure provides host cells, e.g., bacterial cells, that comprise a methionine decarboxylase enzyme for the treatment of diseases and disorders associated with methionine metabolism in a subject. The disclosure further provides pharmaceutical compositions and methods of treating disorders associated with methionine metabolism, such as homocystinuria.

IPC Classes  ?

36.

RECOMBINANT BACTERIA ENGINEERED TO TREAT DISEASES ASSOCIATED WITH METHIONINE METABOLISM AND METHODS OF USE THEREOF

      
Document Number 03228147
Status Pending
Filing Date 2022-08-11
Open to Public Date 2023-02-16
Owner
  • GINKGO BIOWORKS, INC. (USA)
  • SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Carlin, Dylan Alexander
  • Isabella, Vincent M.
  • Mcmurry, Jonathan
  • Moore, Theodore Carlton Iii
  • Perreault, Mylene
  • Ritter, Seth
  • Schmidt, Nathan
  • Simon, Mark

Abstract

The present disclosure provides host cells, e.g., bacterial cells, that comprise a methionine decarboxylase enzyme for the treatment of diseases and disorders associated with methionine metabolism in a subject. The disclosure further provides pharmaceutical compositions and methods of treating disorders associated with methionine metabolism, such as homocystinuria.

IPC Classes  ?

37.

RECOMBINANT BACTERIA ENGINEERED TO TREAT DISEASES ASSOCIATED WITH METHIONINE METABOLISM AND METHODS OF USE THEREOF

      
Application Number US2022074826
Publication Number 2023/019198
Status In Force
Filing Date 2022-08-11
Publication Date 2023-02-16
Owner
  • SYNLOGIC OPERATING COMPANY, INC. (USA)
  • GINKGO BIOWORKS, INC. (USA)
Inventor
  • Carlin, Dylan, Alexander
  • Isabella, Vincent, M.
  • Mcmurry, Jonathan
  • Moore, Theodore, Carlton, Iii
  • Perreault, Mylene
  • Ritter, Seth
  • Schmidt, Nathan
  • Simon, Mark

Abstract

The present disclosure provides host cells, e.g., bacterial cells, that comprise a methionine decarboxylase enzyme for the treatment of diseases and disorders associated with methionine metabolism in a subject. The disclosure further provides pharmaceutical compositions and methods of treating disorders associated with methionine metabolism, such as homocystinuria.

IPC Classes  ?

38.

BACTERIA ENGINEERED TO TREAT DISEASES THAT BENEFIT FROM REDUCED GUT INFLAMMATION AND/OR TIGHTENED GUT MUCOSAL BARRIER

      
Application Number 17835601
Status Pending
Filing Date 2022-06-08
First Publication Date 2023-02-09
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Falb, Dean
  • Isabella, Vincent M.
  • Kotula, Jonathan W.
  • Miller, Paul F.
  • Millet, Yves
  • Fisher, Adam

Abstract

Genetically engineered bacteria, pharmaceutical compositions thereof, and methods of treating or preventing autoimmune disorders, inhibiting inflammatory mechanisms in the gut, and/or tightening gut mucosal barrier function are disclosed.

IPC Classes  ?

39.

OPTIMIZED BACTERIA ENGINEERED TO TREAT DISORDERS INVOLVING THE CATABOLISM OF LEUCINE, ISOLEUCINE, AND/OR VALINE

      
Application Number 17621121
Status Pending
Filing Date 2020-06-19
First Publication Date 2022-11-17
Owner
  • Synlogic Operating Company, Inc. (USA)
  • Ginkgo Bioworks, Inc. (USA)
Inventor
  • Li, Ning
  • Gao, Jian-Rong
  • Morrison, Philippa Jane Reeder
  • Bergeron, Christopher George
  • Carlin, Dylan Alexander
  • Stone, Laura K.
  • Tucker, Alex C.
  • Boyle, Patrick M.

Abstract

The present disclosure provides recombinant bacterial cells that have been engineered with genetic circuitry which allow the recombinant bacterial cells to sense a patients internal environment and respond by turning an engineered metabolic pathway on or off. When turned on, the recombinant bacterial cells complete all of the steps in a metabolic pathway to achieve a therapeutic effect in a host subject. These recombinant bacterial cells are designed to drive therapeutic effects throughout the body of a host from a point of origin of the microbiome. Specifically, the present disclosure provides recombinant bacterial cells comprising a heterologous gene encoding an improved leucine catabolism enzyme with higher activity and/or specificity for leucine over other branched chain amino acids, such as isoleucine or valine. The disclosure further provides pharmaceutical compositions comprising the recombinant bacteria, and methods for treating disorders involving the catabolism of leucine, isoleucine, and/or valine using the pharmaceutical compositions disclosed herein.

IPC Classes  ?

  • A61K 35/747 - Lactobacilli, e.g. L. acidophilus or L. brevis
  • A61K 35/741 - Probiotics
  • A61K 35/745 - Bifidobacteria
  • A61K 35/742 - Spore-forming bacteria, e.g. Bacillus coagulans, Bacillus subtilis, clostridium or Lactobacillus sporogenes
  • A61K 35/744 - Lactic acid bacteria, e.g. enterococci, pediococci, lactococci, streptococci or leuconostocs
  • A61P 13/02 - Drugs for disorders of the urinary system of urine or of the urinary tract, e.g. urine acidifiers
  • C12N 1/20 - BacteriaCulture media therefor
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli

40.

Microorganisms engineered to reduce hyperphenylalaninemia

      
Application Number 17832487
Grant Number 11766463
Status In Force
Filing Date 2022-06-03
First Publication Date 2022-11-17
Grant Date 2023-09-26
Owner Synlogic Operating Company, Inc. (USA)
Inventor
  • Adolfsen, Kristin
  • Greisen, Per
  • Callihan, Isolde
  • Lawrence, Adam
  • Spoonamore, James
  • Konieczka, Jay

Abstract

Genetically engineered bacteria, pharmaceutical compositions thereof, and methods of modulating and treating diseases associated with hyperphenylalaninemia are disclosed.

IPC Classes  ?

  • A61K 35/74 - Bacteria
  • A61P 3/00 - Drugs for disorders of the metabolism
  • A61K 9/00 - Medicinal preparations characterised by special physical form

41.

BIOSYNTHESIS OF ENZYMES FOR USE IN TREATMENT OF MAPLE SYRUP URINE DISEASE (MSUD)

      
Application Number 17621214
Status Pending
Filing Date 2020-06-19
First Publication Date 2022-11-03
Owner
  • Synlogic Operating Company, Inc. (USA)
  • GINKGO BIOWORKS, INC. (USA)
Inventor
  • Boyle, Patrick
  • Carlin, Dylan Alexander
  • Jain, Rishi
  • Putman, Ryan
  • Stone, Laura
  • Tucker, Alex C.
  • Zimmerman, Kolea

Abstract

Provided in this disclosure, in some embodiments, are methods and compositions for treating maple syrup urine disease (MSUD) and other conditions characterized by excessive branched-chain amino acids.

IPC Classes  ?

  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli

42.

BACTERIA ENGINEERED TO SECRETE ACTIVE PROTEINS

      
Document Number 03214394
Status Pending
Filing Date 2022-04-12
Open to Public Date 2022-10-20
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Kalantari, Aida
  • Kenny, Douglas James
  • Reeves, Analise Zaunbrecher
  • James, Michael
  • Charbonneau, Mark

Abstract

Recombinant bacteria capable of producing and secreting therapeutically active EGF, pharmaceutical compositions thereof, and methods of treating disorders are disclosed.

IPC Classes  ?

43.

BACTERIA ENGINEERED TO SECRETE ACTIVE PROTEINS

      
Application Number US2022024412
Publication Number 2022/221273
Status In Force
Filing Date 2022-04-12
Publication Date 2022-10-20
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Kalantari, Aida
  • Kenny, Douglas James
  • Reeves, Analise Zaunbrecher
  • James, Michael
  • Charbonneau, Mark

Abstract

Recombinant bacteria capable of producing and secreting therapeutically active EGF, pharmaceutical compositions thereof, and methods of treating disorders are disclosed.

IPC Classes  ?

44.

BACTERIA ENGINEERED TO TREAT DISORDERS IN WHICH OXALATE IS DETRIMENTAL

      
Document Number 03212817
Status Pending
Filing Date 2022-03-24
Open to Public Date 2022-09-29
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Isabella, Vincent M.
  • Lubkowicz, David
  • James, Michael
  • Kurtz, Caroline

Abstract

The present invention provides recombinant bacterial cells comprising at least one heterologous gene encoding at least one oxalate catabolism enzyme. In another aspect, the recombinant bacterial cells further comprise at least one heterologous gene encoding an importer of oxalate. The invention further provides pharmaceutical compositions comprising the recombinant bacteria, and methods for treating disorders in which oxalate is detrimental, such as hyperoxaluria, using the pharmaceutical compositions of the invention.

IPC Classes  ?

  • A61K 35/74 - Bacteria
  • C12N 15/75 - Vectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora for Bacillus

45.

BACTERIA ENGINEERED TO TREAT DISORDERS IN WHICH OXALATE IS DETRIMENTAL

      
Application Number US2022021748
Publication Number 2022/204406
Status In Force
Filing Date 2022-03-24
Publication Date 2022-09-29
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Isabella, Vincent, M.
  • Lubkowicz, David
  • James, Michael
  • Kurtz, Caroline

Abstract

The present invention provides recombinant bacterial cells comprising at least one heterologous gene encoding at least one oxalate catabolism enzyme. In another aspect, the recombinant bacterial cells further comprise at least one heterologous gene encoding an importer of oxalate. The invention further provides pharmaceutical compositions comprising the recombinant bacteria, and methods for treating disorders in which oxalate is detrimental, such as hyperoxaluria, using the pharmaceutical compositions of the invention.

IPC Classes  ?

  • A61K 35/74 - Bacteria
  • A61P 3/00 - Drugs for disorders of the metabolism
  • A61K 38/43 - EnzymesProenzymesDerivatives thereof
  • C12N 15/75 - Vectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora for Bacillus
  • C07K 14/195 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from bacteria
  • A61K 48/00 - Medicinal preparations containing genetic material which is inserted into cells of the living body to treat genetic diseasesGene therapy

46.

ENUMERATION OF GENETICALLY ENGINEERED MICROORGANISMS BY LIVE CELL COUNTING TECHNIQUES

      
Application Number 17607248
Status Pending
Filing Date 2020-04-29
First Publication Date 2022-08-18
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor Antipov, Eugene

Abstract

Genetically engineered microorganisms, e.g., genetically engineered bacteria, compositions and formulations thereof, as well as methods for characterizing, dosing, and determining the activity of the bacteria, compositions, and formulations, e.g., using a live cell counting method are disclosed.

IPC Classes  ?

  • A61K 38/51 - Lyases (4)
  • C12N 1/20 - BacteriaCulture media therefor
  • C12N 15/63 - Introduction of foreign genetic material using vectorsVectorsUse of hosts thereforRegulation of expression
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli
  • C12N 9/88 - Lyases (4.)
  • C12N 9/06 - Oxidoreductases (1.), e.g. luciferase acting on nitrogen containing compounds as donors (1.4, 1.5, 1.7)
  • A61K 35/747 - Lactobacilli, e.g. L. acidophilus or L. brevis
  • A61K 35/745 - Bifidobacteria
  • A61K 35/744 - Lactic acid bacteria, e.g. enterococci, pediococci, lactococci, streptococci or leuconostocs
  • A61K 35/742 - Spore-forming bacteria, e.g. Bacillus coagulans, Bacillus subtilis, clostridium or Lactobacillus sporogenes
  • A61K 35/741 - Probiotics
  • A61K 47/26 - Carbohydrates, e.g. sugar alcohols, amino sugars, nucleic acids, mono-, di- or oligo-saccharidesDerivatives thereof, e.g. polysorbates, sorbitan fatty acid esters or glycyrrhizin
  • A61K 38/50 - Hydrolases (3) acting on carbon-nitrogen bonds, other than peptide bonds (3.5), e.g. asparaginase
  • A61P 35/00 - Antineoplastic agents
  • G01N 1/30 - StainingImpregnating
  • G01N 15/06 - Investigating concentration of particle suspensions

47.

BACTERIA ENGINEERED TO TREAT DISORDERS IN WHICH OXALATE IS DETRIMENTAL

      
Application Number 17591227
Status Pending
Filing Date 2022-02-02
First Publication Date 2022-07-28
Owner Synlogic Operating Company, Inc. (USA)
Inventor
  • Isabella, Vincent
  • Falb, Dean
  • Anderson, Cami Leigh
  • Miller, Paul
  • Millet, Yves
  • Kotula, Jonathan

Abstract

The present invention provides recombinant bacterial cells comprising at least one heterologous gene encoding at least one oxalate catabolism enzyme. In another aspect, the recombinant bacterial cells further comprise at least one heterologous gene encoding an importer of oxalate. The invention further provides pharmaceutical compositions comprising the recombinant bacteria, and methods for treating disorders in which oxalate is detrimental, such as hyperoxaluria, using the pharmaceutical compositions of the invention.

IPC Classes  ?

  • A61K 35/74 - Bacteria
  • C07K 14/195 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from bacteria
  • C12N 1/00 - Microorganisms, e.g. protozoaCompositions thereofProcesses of propagating, maintaining or preserving microorganisms or compositions thereofProcesses of preparing or isolating a composition containing a microorganismCulture media therefor
  • A61P 3/00 - Drugs for disorders of the metabolism
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli

48.

Bacteria engineered to treat metabolic diseases

      
Application Number 17584956
Grant Number 11896627
Status In Force
Filing Date 2022-01-26
First Publication Date 2022-07-21
Grant Date 2024-02-13
Owner Synlogic Operating Company, Inc. (USA)
Inventor
  • Falb, Dean
  • Isabella, Vincent M.
  • Kotula, Jonathan W.
  • Miller, Paul F.
  • Rowe, Sarah Elizabeth
  • Millet, Yves
  • Fisher, Adam B.

Abstract

Genetically engineered bacteria, pharmaceutical compositions thereof, and methods of attenuating metabolic diseases are disclosed.

IPC Classes  ?

  • A61K 35/74 - Bacteria
  • A23L 33/135 - Bacteria or derivatives thereof, e.g. probiotics
  • A61P 3/10 - Drugs for disorders of the metabolism for glucose homeostasis for hyperglycaemia, e.g. antidiabetics
  • A61K 9/00 - Medicinal preparations characterised by special physical form
  • A61K 35/741 - Probiotics
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • A61K 35/747 - Lactobacilli, e.g. L. acidophilus or L. brevis
  • A61K 35/744 - Lactic acid bacteria, e.g. enterococci, pediococci, lactococci, streptococci or leuconostocs
  • A61K 35/745 - Bifidobacteria
  • A61K 35/00 - Medicinal preparations containing materials or reaction products thereof with undetermined constitution

49.

SYNERGISTIC COMBINATIONS OF ARGININE-PRODUCING BACTERIA AND/OR AMMONIA-CONSUMING BACTERIA AND CHECKPOINT INHIBITORS AND METHODS OF USE THEREOF

      
Application Number 17610741
Status Pending
Filing Date 2020-05-13
First Publication Date 2022-07-21
Owner Synlogic Operating Company, Inc. (USA)
Inventor
  • Lora, Jose M.
  • Geiger, Roger

Abstract

Disclosed herein are synergistic compositions and methods using arginine-producing bacteria and/or ammonia-consuming bacteria in combination with a checkpoint inhibitor for use in treating cancer.

IPC Classes  ?

50.

METHODS OF TREATING CANCER USING RECOMBINANT MICROORGANISMS EXPRESSING A STING AGONIST

      
Application Number US2022012030
Publication Number 2022/150779
Status In Force
Filing Date 2022-01-11
Publication Date 2022-07-14
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Sokolovska, Anna
  • Brennan, Aoife

Abstract

Therapies comprising a recombinant microorganism expressing a STING agonist, and methods of modulating and treating cancers are disclosed.

IPC Classes  ?

  • A61K 35/74 - Bacteria
  • A61P 35/00 - Antineoplastic agents
  • A61P 37/04 - Immunostimulants
  • C12N 1/20 - BacteriaCulture media therefor
  • C12N 1/21 - BacteriaCulture media therefor modified by introduction of foreign genetic material
  • C12N 9/00 - Enzymes, e.g. ligases (6.)ProenzymesCompositions thereofProcesses for preparing, activating, inhibiting, separating, or purifying enzymes
  • C12N 15/52 - Genes encoding for enzymes or proenzymes

51.

MICROORGANISMS ENGINEERED TO REDUCE HYPERPHENYLALANINEMIA

      
Application Number US2021063976
Publication Number 2022/146718
Status In Force
Filing Date 2021-12-17
Publication Date 2022-07-07
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Adolfsen, Kristin
  • Greisen, Per
  • Callihan, Isolde
  • Lawrence, Adam
  • Spoonamore, James
  • Konieczka, Jay
  • Monahan, Catherine
  • Isabella, Vincent
  • Lubkowicz, David

Abstract

Genetically engineered bacteria, pharmaceutical compositions thereof, and methods of modulating and treating diseases associated with hyperphenylalaninemia are disclosed.

IPC Classes  ?

52.

ENGINEERED MICROORGANISMS

      
Document Number 03200887
Status Pending
Filing Date 2021-12-02
Open to Public Date 2022-06-09
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • James, Michael
  • Kalantari, Aida
  • Mirabella, Tea
  • Renaud, Lauren
  • Kristensen, Lee
  • Isabella, Vincent

Abstract

The present invention relates to engineered microorganisms, wherein the engineered microorganisms comprise a therapeutic molecule and a modified pks island.

IPC Classes  ?

  • A61K 35/74 - Bacteria
  • C07K 14/245 - Escherichia (G)
  • C12N 9/00 - Enzymes, e.g. ligases (6.)ProenzymesCompositions thereofProcesses for preparing, activating, inhibiting, separating, or purifying enzymes
  • C12N 9/10 - Transferases (2.)

53.

ENGINEERED MICROORGANISMS

      
Application Number US2021061579
Publication Number 2022/120028
Status In Force
Filing Date 2021-12-02
Publication Date 2022-06-09
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • James, Michael
  • Kalantari, Aida
  • Mirabella, Tea
  • Renaud, Lauren
  • Kristensen, Lee
  • Isabella, Vincent

Abstract

The present invention relates to engineered microorganisms, wherein the engineered microorganisms comprise a therapeutic molecule and a modified pks island.

IPC Classes  ?

  • C12N 9/00 - Enzymes, e.g. ligases (6.)ProenzymesCompositions thereofProcesses for preparing, activating, inhibiting, separating, or purifying enzymes
  • C12N 9/10 - Transferases (2.)
  • C07K 14/245 - Escherichia (G)
  • A61K 35/74 - Bacteria
  • C12R 1/19 - Escherichia coli

54.

BACTERIA ENGINEERED TO TREAT DISORDERS INVOLVING THE CATABOLISM OF A BRANCHED CHAIN AMINO ACID

      
Application Number 17547498
Status Pending
Filing Date 2021-12-10
First Publication Date 2022-06-02
Owner Synlogic Operating Company, Inc. (USA)
Inventor
  • Falb, Dean
  • Miller, Paul F.
  • Millet, Yves
  • Isabella, Vincent M.
  • Kotula, Jonathan W.
  • Tucker, Alex

Abstract

The present disclosure provides recombinant bacterial cells that have been engineered with genetic circuitry which allow the recombinant bacterial cells to sense a patient's internal environment and respond by turning an engineered metabolic pathway on or off. When turned on, the recombinant bacterial cells complete all of the steps in a metabolic pathway to achieve a therapeutic effect in a host subject. These recombinant bacterial cells are designed to drive therapeutic effects throughout the body of a host from a point of origin of the microbiome. Specifically, the present disclosure provides recombinant bacterial cells comprising a heterologous gene encoding a branched chain amino acid catabolism enzyme. The disclosure further provides pharmaceutical compositions comprising the recombinant bacteria, and methods for treating disorders involving the catabolism of branched chain amino acids using the pharmaceutical compositions disclosed herein.

IPC Classes  ?

  • A61K 35/74 - Bacteria
  • C07K 14/245 - Escherichia (G)
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12N 9/00 - Enzymes, e.g. ligases (6.)ProenzymesCompositions thereofProcesses for preparing, activating, inhibiting, separating, or purifying enzymes
  • A61K 9/00 - Medicinal preparations characterised by special physical form
  • A61K 38/44 - Oxidoreductases (1)
  • C12N 9/04 - Oxidoreductases (1.), e.g. luciferase acting on CHOH groups as donors, e.g. glucose oxidase, lactate dehydrogenase (1.1)
  • C12N 9/06 - Oxidoreductases (1.), e.g. luciferase acting on nitrogen containing compounds as donors (1.4, 1.5, 1.7)
  • C12N 9/10 - Transferases (2.)
  • C12N 9/88 - Lyases (4.)
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli

55.

BACTERIA ENGINEERED TO SECRETE ACTIVE PROTEINS

      
Application Number US2021052882
Publication Number 2022/072636
Status In Force
Filing Date 2021-09-30
Publication Date 2022-04-07
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Falb, Dean
  • Isabella, Vincent, M.
  • Miller, Paul, F.
  • Fisher, Adam, B.
  • Li, Ning
  • Lora, Jose, M.

Abstract

Recombinant bacteria capable of producing effector molecules, which are secreted as therapeutically active polypeptides, pharmaceutical compositions thereof, and methods of treating or preventing autoimmune disorders, cancer and/or metabolic diseases, are disclosed.

IPC Classes  ?

56.

RECOMBINANT BACTERIA FOR PRODUCTION OF D-LACTATE AND/OR L-LACTATE AND USES THEREOF

      
Application Number US2021044923
Publication Number 2022/032084
Status In Force
Filing Date 2021-08-06
Publication Date 2022-02-10
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor Li, Ning

Abstract

The present disclosure provides recombinant bacteria for production of D-lactate and/or L-lactate. Pharmaceutical compositions and methods of treating diseases are also included in the present invention.

IPC Classes  ?

57.

SURFACE DISPLAY OF PROTEINS ON RECOMBINANT BACTERIA AND USES THEREOF

      
Application Number US2021034137
Publication Number 2021/242798
Status In Force
Filing Date 2021-05-26
Publication Date 2021-12-02
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor Li, Ning

Abstract

Recombinant microorganisms, pharmaceutical compositions thereof, and methods of protein display on the cell surface of the microorganisms are disclosed.

IPC Classes  ?

  • A61K 35/66 - Microorganisms or materials therefrom
  • A61P 31/00 - Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
  • A61P 37/02 - Immunomodulators

58.

RECOMBINANT BACTERIA FOR PRODUCTION OF INDOLE-3-ACETIC ACID (IAA) AND USES THEREOF

      
Application Number US2021034314
Publication Number 2021/242897
Status In Force
Filing Date 2021-05-26
Publication Date 2021-12-02
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Li, Ning
  • Gao, Jian-Rong
  • Bergeron, Christopher, George

Abstract

The present disclosure provides recombinant bacteria for production of indole-3 -acetic acid (IAA). Pharmaceutical compositions and methods of treating diseases are also included.

IPC Classes  ?

  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli
  • C12N 15/74 - Vectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora
  • A61K 35/74 - Bacteria

59.

RECOMBINANT BACTERIA FOR USE AS A VACCINE TO PREVENT COVID19 INFECTION

      
Application Number US2021026106
Publication Number 2021/207306
Status In Force
Filing Date 2021-04-07
Publication Date 2021-10-14
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Gao, Jian-Rong
  • Kurtz, Caroline
  • Sokolovska, Anna
  • Li, Ning

Abstract

Modified microorganisms, pharmaceutical compositions thereof, and methods of preventing and treating the coronavirus disease 2019 (COVID-19) are disclosed.

IPC Classes  ?

  • A61K 39/12 - Viral antigens
  • C12N 7/00 - Viruses, e.g. bacteriophagesCompositions thereofPreparation or purification thereof
  • A61K 39/215 - Coronaviridae, e.g. avian infectious bronchitis virus

60.

MICROORGANISMS ENGINEERED TO REDUCE HYPERPHENYLALANINEMIA

      
Document Number 03166528
Status Pending
Filing Date 2021-03-18
Open to Public Date 2021-09-23
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Adolfsen, Kristin
  • Greisen, Per
  • Callihan, Isolde
  • Lawrence, Adam
  • Spoonamore, James
  • Konieczka, Jay

Abstract

Genetically engineered bacteria, pharmaceutical compositions thereof, and methods of modulating and treating diseases associated with hyperphenylalaninemia are disclosed.

IPC Classes  ?

  • A61K 35/74 - Bacteria
  • C12N 1/21 - BacteriaCulture media therefor modified by introduction of foreign genetic material
  • C12N 9/88 - Lyases (4.)

61.

BACTERIA ENGINEERED TO TREAT DISORDERS INVOLVING THE CATABOLISM OF LEUCINE

      
Application Number US2021022676
Publication Number 2021/188618
Status In Force
Filing Date 2021-03-17
Publication Date 2021-09-23
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor Li, Ning

Abstract

The present disclosure provides recombinant bacterial cells that have been engineered with genetic circuitry which allow the recombinant bacterial cells to sense a patient' s internal environment and respond by turning an engineered metabolic pathway on or off. When turned on, the recombinant bacterial cells complete all of the steps in a metabolic pathway to achieve a therapeutic effect in a host subject. These recombinant bacterial cells are designed to drive therapeutic effects throughout the body of a host from a point of origin of the microbiome. Specifically, the present disclosure provides recombinant bacterial cells comprising a heterologous gene encoding an improved leucine catabolism enzyme with higher activity and/or specificity for leucine. The disclosure further provides pharmaceutical compositions comprising the recombinant bacteria, and methods for treating disorders involving the catabolism of leucine using the pharmaceutical compositions disclosed herein.

IPC Classes  ?

62.

MICROORGANISMS ENGINEERED TO REDUCE HYPERPHENYLALANINEMIA

      
Application Number US2021023003
Publication Number 2021/188819
Status In Force
Filing Date 2021-03-18
Publication Date 2021-09-23
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Adolfsen, Kristin
  • Greisen, Per
  • Callihan, Isolde
  • Lawrence, Adam
  • Spoonamore, James
  • Konieczka, Jay

Abstract

Genetically engineered bacteria, pharmaceutical compositions thereof, and methods of modulating and treating diseases associated with hyperphenylalaninemia are disclosed.

IPC Classes  ?

63.

RECOMBINANT BACTERIA ENGINEERED TO TREAT DISEASES ASSOCIATED WITH URIC ACID AND METHODS OF USE THEREOF

      
Application Number US2021019625
Publication Number 2021/173808
Status In Force
Filing Date 2021-02-25
Publication Date 2021-09-02
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Isabella, Vincent, M.
  • Cotton, Sean
  • Gao, Jian-Rong
  • Mirabella, Teodelinda
  • Bergeron, Christopher, George

Abstract

The present disclosure provides recombinant bacterial cells that have been engineered with genetic circuitry which allow the recombinant bacterial cells to sense a patient' s internal environment and respond by turning an engineered metabolic pathway on or off. When turned on, the recombinant bacterial cells complete all of the steps in a metabolic pathway to achieve a therapeutic effect in a host subject. These recombinant bacterial cells are designed to drive therapeutic effects throughout the body of a host from a point of origin of the microbiome. Specifically, the present disclosure provides recombinant bacterial cells that comprise a uric acid catabolism enzyme, e.g., a uric acid degrading enzyme, for the treatment of diseases and disorders associated with uric acid, including hyperuricemia and gout, in a subject. The disclosure further provides pharmaceutical compositions and methods of treating disorders associated with uric acid, such as hyperuricemia.

IPC Classes  ?

  • A61K 8/66 - Enzymes
  • A61P 19/00 - Drugs for skeletal disorders
  • C12N 1/21 - BacteriaCulture media therefor modified by introduction of foreign genetic material
  • C12N 9/06 - Oxidoreductases (1.), e.g. luciferase acting on nitrogen containing compounds as donors (1.4, 1.5, 1.7)
  • C12Q 1/62 - Measuring or testing processes involving enzymes, nucleic acids or microorganismsCompositions thereforProcesses of preparing such compositions involving uric acid

64.

RECOMBINANT BACTERIA ENGINEERED TO TREAT DISEASES ASSOCIATED WITH METHIONINE METABOLISM AND METHODS OF USE THEREOF

      
Application Number US2021017775
Publication Number 2021/163421
Status In Force
Filing Date 2021-02-12
Publication Date 2021-08-19
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Isabella, Vincent, M.
  • Cotton, Sean

Abstract

The present disclosure provides recombinant bacterial cells that have been engineered with genetic circuitry which allow the recombinant bacterial cells to sense a patient's internal environment and respond by turning an engineered metabolic pathway on or off. When turned on, the recombinant bacterial cells complete all of the steps in a metabolic pathway to achieve a therapeutic effect in a host subject. These recombinant bacterial cells are designed to drive therapeutic effects throughout the body of a host from a point of origin of the microbiome. Specifically, the present disclosure provides recombinant bacterial cells that comprise an amino acid catabolism enzyme, e.g., a methionine catabolism enzyme for the treatment of diseases and disorders associated with amino acid metabolism, including homocystinuria, in a subject. The disclosure further provides pharmaceutical compositions and methods of treating disorders associated with amino acid metabolism, such as homocystinuria.

IPC Classes  ?

  • C12N 1/21 - BacteriaCulture media therefor modified by introduction of foreign genetic material
  • C12N 15/00 - Mutation or genetic engineeringDNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purificationUse of hosts therefor
  • C12N 15/09 - Recombinant DNA-technology
  • C12N 15/52 - Genes encoding for enzymes or proenzymes

65.

OPTIMIZED BACTERIA ENGINEERED TO TREAT DISORDERS INVOLVING THE CATABOLISM OF LEUCINE, ISOLEUCINE, AND/OR VALINE

      
Application Number US2021013398
Publication Number 2021/146394
Status In Force
Filing Date 2021-01-14
Publication Date 2021-07-22
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • James, Michael
  • Castillo, Mary, Joan
  • Wong, Tiffany
  • Li, Ning

Abstract

The present disclosure provides recombinant bacterial cells that have been engineered with genetic circuitry which allow the recombinant bacterial cells to sense a patient' s internal environment and respond by turning an engineered metabolic pathway on or off. When turned on, the recombinant bacterial cells complete all of the steps in a metabolic pathway to achieve a therapeutic effect in a host subject. These recombinant bacterial cells are designed to drive therapeutic effects throughout the body of a host from a point of origin of the microbiome. Specifically, the present disclosure provides recombinant bacterial cells comprising a heterologous gene encoding an improved leucine catabolism enzyme with higher activity and/or specificity for leucine over other branched chain amino acids, such as isoleucine or valine. The disclosure further provides pharmaceutical compositions comprising the recombinant bacteria, and methods for treating disorders involving the catabolism of leucine, isoleucine, and/or valine using the pharmaceutical compositions disclosed herein.

IPC Classes  ?

  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C07K 14/245 - Escherichia (G)

66.

BACTERIA ENGINEERED TO TREAT DISORDERS IN WHICH OXALATE IS DETRIMENTAL

      
Application Number US2021013401
Publication Number 2021/146397
Status In Force
Filing Date 2021-01-14
Publication Date 2021-07-22
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Isabella, Vincent, M.
  • Lubkowicz, David
  • James, Michael

Abstract

The present invention provides recombinant bacterial cells comprising at least one heterologous gene encoding at least one oxalate catabolism enzyme. In another aspect, the recombinant bacterial cells further comprise at least one heterologous gene encoding an importer of oxalate. The invention further provides pharmaceutical compositions comprising the recombinant bacteria, and methods for treating disorders in which oxalate is detrimental, such as hyperoxaluria, using the pharmaceutical compositions of the invention.

IPC Classes  ?

  • A61K 35/74 - Bacteria
  • A61P 3/00 - Drugs for disorders of the metabolism
  • C12N 1/00 - Microorganisms, e.g. protozoaCompositions thereofProcesses of propagating, maintaining or preserving microorganisms or compositions thereofProcesses of preparing or isolating a composition containing a microorganismCulture media therefor
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli

67.

Bacteria engineered to treat diseases associated with hyperammonemia

      
Application Number 17123469
Grant Number 11845964
Status In Force
Filing Date 2020-12-16
First Publication Date 2021-06-17
Grant Date 2023-12-19
Owner Synlogic Operating Company, Inc. (USA)
Inventor
  • Falb, Dean
  • Isabella, Vincent M.
  • Kotula, Jonathan W.
  • Miller, Paul F.
  • Machinani, Suman

Abstract

Genetically engineered bacteria, pharmaceutical compositions thereof, and methods of modulating and treating disorders associated with hyperammonemia are disclosed.

IPC Classes  ?

  • A01N 63/00 - Biocides, pest repellants or attractants, or plant growth regulators containing microorganisms, viruses, microbial fungi, animals or substances produced by, or obtained from, microorganisms, viruses, microbial fungi or animals, e.g. enzymes or fermentates
  • C12N 9/10 - Transferases (2.)
  • A61K 35/74 - Bacteria
  • A61K 35/741 - Probiotics
  • C07K 14/245 - Escherichia (G)
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli
  • C12N 1/20 - BacteriaCulture media therefor
  • C12P 7/52 - Propionic acidButyric acids
  • C12R 1/19 - Escherichia coli

68.

Bacteria engineered to treat a disease or disorder

      
Application Number 17124661
Grant Number 11883439
Status In Force
Filing Date 2020-12-17
First Publication Date 2021-06-10
Grant Date 2024-01-30
Owner Synlogic Operating Company, Inc. (USA)
Inventor
  • Falb, Dean
  • Miller, Paul F.
  • Kotula, Jonathan W.
  • Isabella, Vincent M.
  • Machinani, Suman
  • Fisher, Adam B.
  • Millet, Yves

Abstract

Genetically programmed microorganisms, such as bacteria, pharmaceutical compositions thereof, and methods of modulating and treating a disease and/or disorder are disclosed.

IPC Classes  ?

  • A61K 35/74 - Bacteria
  • A61K 39/02 - Bacterial antigens
  • C12N 9/88 - Lyases (4.)
  • C12N 9/06 - Oxidoreductases (1.), e.g. luciferase acting on nitrogen containing compounds as donors (1.4, 1.5, 1.7)
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli
  • C07K 14/245 - Escherichia (G)
  • A61K 35/741 - Probiotics
  • C07K 14/195 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from bacteria
  • A61K 38/00 - Medicinal preparations containing peptides
  • A61K 35/00 - Medicinal preparations containing materials or reaction products thereof with undetermined constitution

69.

Bacteria engineered to treat liver disease

      
Application Number 17058172
Grant Number 11439673
Status In Force
Filing Date 2019-05-31
First Publication Date 2021-05-27
Grant Date 2022-09-13
Owner Synlogic Operating Company, Inc. (USA)
Inventor
  • Miller, Paul F.
  • Isabella, Vincent M.
  • Falb, Dean
  • Kotula, Jonathan W.
  • Dagon, Yossi

Abstract

The disclosure provides genetically engineered bacteria that are capable of reducing excess ammonia and converting ammonia and/or nitrogen into alternate byproducts. The invention also provides pharmaceutical compositions comprising the genetically engineered bacteria, and methods of modulating and treating disorders associated with excess ammonia and inflammation in the gut and the liver, including, for example, hepatic encephalopathy, NASH/NAFLD, HCV, and Huntington's disease, in a subject, comprising administering the engineered bacterium to the subject.

IPC Classes  ?

  • A61K 35/742 - Spore-forming bacteria, e.g. Bacillus coagulans, Bacillus subtilis, clostridium or Lactobacillus sporogenes
  • A61P 1/16 - Drugs for disorders of the alimentary tract or the digestive system for liver or gallbladder disorders, e.g. hepatoprotective agents, cholagogues, litholytics
  • A61K 35/745 - Bifidobacteria

70.

OPTIMIZED BACTERIA ENGINEERED TO TREAT DISORDERS INVOLVING THE CATABOLISM OF LEUCINE, ISOLEUCINE, AND/OR VALINE

      
Document Number 03144416
Status Pending
Filing Date 2020-06-19
Open to Public Date 2020-12-24
Owner
  • GINKGO BIOWORKS, INC. (USA)
  • SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Li, Ning
  • Gao, Jian-Rong
  • Morrison, Philippa Jane Reeder
  • Bergeron, Christoper George
  • Boyle, Patrick M.
  • Stone, Laura K.
  • Carlin, Dylan Alexander
  • Tucker, Alex C.

Abstract

The present disclosure provides recombinant bacterial cells that have been engineered with genetic circuitry which allow the recombinant bacterial cells to sense a patient's internal environment and respond by turning an engineered metabolic pathway on or off. When turned on, the recombinant bacterial cells complete all of the steps in a metabolic pathway to achieve a therapeutic effect in a host subject. These recombinant bacterial cells are designed to drive therapeutic effects throughout the body of a host from a point of origin of the microbiome. Specifically, the present disclosure provides recombinant bacterial cells comprising a heterologous gene encoding an improved leucine catabolism enzyme with higher activity and/or specificity for leucine over other branched chain amino acids, such as isoleucine or valine. The disclosure further provides pharmaceutical compositions comprising the recombinant bacteria, and methods for treating disorders involving the catabolism of leucine, isoleucine, and/or valine using the pharmaceutical compositions disclosed herein.

IPC Classes  ?

71.

BIOSYNTHESIS OF ENZYMES FOR USE IN TREATMENT OF MAPLE SYRUP URINE DISEASE (MSUD)

      
Application Number US2020038813
Publication Number 2020/257707
Status In Force
Filing Date 2020-06-19
Publication Date 2020-12-24
Owner
  • GINKGO BIOWORKS, INC. (USA)
  • SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Jain, Rishi
  • Putman, Ryan
  • Zimmerman, Kolea

Abstract

Provided in this disclosure, in some embodiments, are methods and compositions for treating maple syrup urine disease (MSUD) and other conditions characterized by excessive branched-chain amino acids.

IPC Classes  ?

  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli
  • C12N 9/04 - Oxidoreductases (1.), e.g. luciferase acting on CHOH groups as donors, e.g. glucose oxidase, lactate dehydrogenase (1.1)
  • C12N 9/06 - Oxidoreductases (1.), e.g. luciferase acting on nitrogen containing compounds as donors (1.4, 1.5, 1.7)
  • C12P 7/04 - Preparation of oxygen-containing organic compounds containing a hydroxy group acyclic

72.

OPTIMIZED BACTERIA ENGINEERED TO TREAT DISORDERS INVOLVING THE CATABOLISM OF LEUCINE, ISOLEUCINE, AND/OR VALINE

      
Application Number US2020038675
Publication Number 2020/257610
Status In Force
Filing Date 2020-06-19
Publication Date 2020-12-24
Owner
  • SYNLOGIC OPERATING COMPANY, INC. (USA)
  • GINKGO BIOWORKS, INC. (USA)
Inventor
  • Li, Ning
  • Gao, Jian-Rong
  • Morrison, Philippa Jane Reeder
  • Bergeron, Christopher, George

Abstract

The present disclosure provides recombinant bacterial cells that have been engineered with genetic circuitry which allow the recombinant bacterial cells to sense a patient's internal environment and respond by turning an engineered metabolic pathway on or off. When turned on, the recombinant bacterial cells complete all of the steps in a metabolic pathway to achieve a therapeutic effect in a host subject. These recombinant bacterial cells are designed to drive therapeutic effects throughout the body of a host from a point of origin of the microbiome. Specifically, the present disclosure provides recombinant bacterial cells comprising a heterologous gene encoding an improved leucine catabolism enzyme with higher activity and/or specificity for leucine over other branched chain amino acids, such as isoleucine or valine. The disclosure further provides pharmaceutical compositions comprising the recombinant bacteria, and methods for treating disorders involving the catabolism of leucine, isoleucine, and/or valine using the pharmaceutical compositions disclosed herein.

IPC Classes  ?

73.

SYNERGISTIC COMBINATIONS OF ARGININE-PRODUCING BACTERIA AND/OR AMMONIA-CONSUMING BACTERIA AND CHECKPOINT INHIBITORS AND METHODS OF USE THEREOF

      
Application Number US2020032588
Publication Number 2020/232063
Status In Force
Filing Date 2020-05-13
Publication Date 2020-11-19
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Lora, Jose, M.
  • Geiger, Roger

Abstract

Disclosed herein are synergistic compositions and methods using arginine-producing bacteria and/or ammonia-consuming bacteria in combination with a checkpoint inhibitor for use in treating cancer.

IPC Classes  ?

  • C12P 13/10 - CitrullineArginineOrnithine
  • C07K 16/28 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
  • A61K 39/395 - AntibodiesImmunoglobulinsImmune serum, e.g. antilymphocytic serum
  • A61P 35/00 - Antineoplastic agents
  • A61P 37/02 - Immunomodulators

74.

Bacteria Engineered to Reduce Hyperphenylalaninemia

      
Application Number 16788458
Status Pending
Filing Date 2020-02-12
First Publication Date 2020-08-06
Owner Synlogic Operating Company, Inc. (USA)
Inventor
  • Falb, Dean
  • Isabella, Vincent M.
  • Kotula, Jonathan W.
  • Miller, Paul F.
  • Millet, Yves
  • Rowe, Sarah

Abstract

Genetically engineered bacteria, pharmaceutical compositions thereof, and methods of modulating and treating diseases associated with hyperphenylalaninemia are disclosed.

IPC Classes  ?

  • A61K 35/74 - Bacteria
  • C07K 14/195 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from bacteria
  • A61K 35/741 - Probiotics
  • C12N 9/06 - Oxidoreductases (1.), e.g. luciferase acting on nitrogen containing compounds as donors (1.4, 1.5, 1.7)
  • C07K 14/245 - Escherichia (G)
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli
  • C12N 9/88 - Lyases (4.)
  • A61K 39/02 - Bacterial antigens

75.

Bacteria for the treatment of disorders

      
Application Number 16621792
Grant Number 11879123
Status In Force
Filing Date 2018-06-21
First Publication Date 2020-06-04
Grant Date 2024-01-23
Owner Synlogic Operating Company, Inc. (USA)
Inventor
  • Falb, Dean
  • Fisher, Adam B.
  • Isabella, Vincent M.
  • Kotula, Jonathan W.
  • Lubkowicz, David
  • Miller, Paul F.
  • Millet, Yves
  • Rowe, Sarah Elizabeth

Abstract

Modified probiotics, pharmaceutical compositions thereof, and methods of modulating and treating disorders are disclosed.

IPC Classes  ?

  • A61K 9/00 - Medicinal preparations characterised by special physical form
  • C07K 14/245 - Escherichia (G)
  • A61K 35/74 - Bacteria
  • C12Q 1/527 - Measuring or testing processes involving enzymes, nucleic acids or microorganismsCompositions thereforProcesses of preparing such compositions involving lyase
  • C12N 15/63 - Introduction of foreign genetic material using vectorsVectorsUse of hosts thereforRegulation of expression
  • C12N 1/20 - BacteriaCulture media therefor
  • A61K 35/741 - Probiotics

76.

MICROORGANISMS PROGRAMMED TO PRODUCE IMMUNE MODULATORS AND ANTI-CANCER THERAPEUTICS IN TUMOR CELLS

      
Application Number 16619010
Status Pending
Filing Date 2018-07-11
First Publication Date 2020-05-14
Owner Synlogic Operating Company, Inc. (USA)
Inventor
  • Fisher, Adam
  • Li, Ning
  • Lora, Jose M.

Abstract

Genetically programmed microorganisms, such as bacteria or virus, pharmaceutical compositions thereof, and methods of modulating and treating cancers are disclosed.

IPC Classes  ?

  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli
  • C12N 9/24 - Hydrolases (3.) acting on glycosyl compounds (3.2)
  • C12N 9/10 - Transferases (2.)
  • C12N 9/48 - Hydrolases (3.) acting on peptide bonds, e.g. thromboplastin, leucine aminopeptidase (3.4)
  • A61K 35/74 - Bacteria
  • A61P 35/00 - Antineoplastic agents
  • C12N 15/90 - Stable introduction of foreign DNA into chromosome
  • C12N 1/20 - BacteriaCulture media therefor

77.

COMBINATION THERAPIES OF MICROORGANISMS AND IMMUNE MODULATORS FOR USE IN TREATING CANCER

      
Application Number US2019060406
Publication Number 2020/097424
Status In Force
Filing Date 2019-11-08
Publication Date 2020-05-14
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Lora, Jose, M.
  • Sokolovska, Anna

Abstract

Combination therapies comprising a microorganism and an immune modulator, and methods of modulating and treating cancers are disclosed.

IPC Classes  ?

78.

BACTERIA ENGINEERED TO TREAT LIVER DISEASE

      
Application Number US2019034969
Publication Number 2019/232415
Status In Force
Filing Date 2019-05-31
Publication Date 2019-12-05
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Miller, Paul, F.
  • Isabella, Vincent, M.
  • Falb, Dean
  • Kotula, Jonathan, W.
  • Dagon, Yossi

Abstract

The disclosure provides genetically engineered bacteria that are capable of reducing excess ammonia and converting ammonia and/or nitrogen into alternate byproducts. The invention also provides pharmaceutical compositions comprising the genetically engineered bacteria, and methods of modulating and treating disorders associated with excess ammonia and inflammation in the gut and the liver, including, for example, hepatic encephalopathy, NASH/NAFLD, HCV, and Huntington's disease, in a subject, comprising administering the engineered bacterium to the subject.

IPC Classes  ?

79.

Bacteria engineered to treat diseases associated with hyperammonemia

      
Application Number 15599285
Grant Number 11060073
Status In Force
Filing Date 2017-05-18
First Publication Date 2019-11-28
Grant Date 2021-07-13
Owner Synlogic Operating Company, Inc. (USA)
Inventor
  • Falb, Dean
  • Isabella, Vincent M
  • Kotula, Jonathan W.
  • Miller, Paul F.
  • Machinani, Suman

Abstract

Genetically engineered bacteria, pharmaceutical compositions thereof, and methods of modulating and treating disorders associated with hyperammonemia are disclosed.

IPC Classes  ?

  • A01N 63/00 - Biocides, pest repellants or attractants, or plant growth regulators containing microorganisms, viruses, microbial fungi, animals or substances produced by, or obtained from, microorganisms, viruses, microbial fungi or animals, e.g. enzymes or fermentates
  • C12N 9/10 - Transferases (2.)
  • A61K 35/74 - Bacteria
  • C12R 1/19 - Escherichia coli
  • A61K 35/741 - Probiotics
  • C07K 14/245 - Escherichia (G)
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli
  • C12P 7/52 - Propionic acidButyric acids

80.

Microorganisms programmed to produce immune modulators and anti-cancer therapeutics in tumor cells

      
Application Number 16474383
Grant Number 11471494
Status In Force
Filing Date 2018-01-05
First Publication Date 2019-11-07
Grant Date 2022-10-18
Owner Synlogic Operating Company, Inc. (USA)
Inventor
  • Falb, Dean
  • Kotula, Jonathan W.
  • Isabella, Vincent M.
  • Miller, Paul F.
  • Machinani, Suman
  • Saha, Saurabh
  • Fisher, Adam B.
  • Millet, Yves
  • Li, Ning
  • Lora, Jose M.

Abstract

Genetically programmed microorganisms, such as bacteria or virus, pharmaceutical compositions thereof, and methods of modulating and treating cancers are disclosed.

IPC Classes  ?

  • A61K 35/74 - Bacteria
  • C07K 14/52 - CytokinesLymphokinesInterferons
  • C07K 14/525 - Tumour necrosis factor [TNF]
  • C07K 14/53 - Colony-stimulating factor [CSF]
  • C07K 14/54 - Interleukins [IL]
  • C07K 14/57 - IFN-gamma
  • C07K 14/705 - ReceptorsCell surface antigensCell surface determinants
  • C07K 16/28 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
  • C12N 9/26 - Hydrolases (3.) acting on glycosyl compounds (3.2) acting on alpha-1, 4-glucosidic bonds, e.g. hyaluronidase, invertase, amylase
  • C12N 15/62 - DNA sequences coding for fusion proteins
  • C12N 15/74 - Vectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora
  • A61K 33/243 - PlatinumCompounds thereof

81.

Bacteria engineered to treat metabolic diseases

      
Application Number 15738174
Grant Number 11291693
Status In Force
Filing Date 2016-06-24
First Publication Date 2019-10-03
Grant Date 2022-04-05
Owner Synlogic Operating Company, Inc. (USA)
Inventor
  • Falb, Dean
  • Isabella, Vincent M.
  • Kotula, Jonathan W.
  • Miller, Paul F.
  • Rowe, Sarah
  • Millet, Yves
  • Fisher, Adam

Abstract

Genetically engineered bacteria, pharmaceutical compositions thereof, and methods of attenuating metabolic diseases are disclosed.

IPC Classes  ?

  • A61K 35/74 - Bacteria
  • A23L 33/135 - Bacteria or derivatives thereof, e.g. probiotics
  • A61P 3/10 - Drugs for disorders of the metabolism for glucose homeostasis for hyperglycaemia, e.g. antidiabetics
  • A61K 9/00 - Medicinal preparations characterised by special physical form
  • A61K 35/741 - Probiotics
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • A61K 35/747 - Lactobacilli, e.g. L. acidophilus or L. brevis
  • A61K 35/744 - Lactic acid bacteria, e.g. enterococci, pediococci, lactococci, streptococci or leuconostocs
  • A61K 35/745 - Bifidobacteria
  • A61K 35/00 - Medicinal preparations containing materials or reaction products thereof with undetermined constitution

82.

Microorganisms programmed to produce immune modulators and anti-cancer therapeutics in tumor cells

      
Application Number 16069220
Grant Number 11723932
Status In Force
Filing Date 2017-01-11
First Publication Date 2019-05-30
Grant Date 2023-08-15
Owner Synlogic Operating Company, Inc. (USA)
Inventor
  • Falb, Dean
  • Kotula, Jonathan W.
  • Isabella, Vincent M.
  • Miller, Paul F.
  • Machinani, Suman
  • Saha, Saurabh
  • Fisher, Adam B.
  • Millet, Yves
  • Li, Ning

Abstract

Genetically programmed microorganisms, such as bacteria or virus, pharmaceutical compositions thereof, and methods of modulating and treating cancers are disclosed.

IPC Classes  ?

  • A01N 63/00 - Biocides, pest repellants or attractants, or plant growth regulators containing microorganisms, viruses, microbial fungi, animals or substances produced by, or obtained from, microorganisms, viruses, microbial fungi or animals, e.g. enzymes or fermentates
  • A61K 35/74 - Bacteria
  • C07K 16/28 - Immunoglobulins, e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
  • A61P 35/00 - Antineoplastic agents
  • C07K 14/54 - Interleukins [IL]
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli
  • C12P 13/22 - TryptophanTyrosinePhenylalanine3,4-Dihydroxyphenylalanine
  • A61K 38/20 - Interleukins
  • C12N 15/00 - Mutation or genetic engineeringDNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purificationUse of hosts therefor
  • C12N 5/00 - Undifferentiated human, animal or plant cells, e.g. cell linesTissuesCultivation or maintenance thereofCulture media therefor
  • C07K 14/34 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from bacteria from Corynebacterium (G)
  • A61K 31/00 - Medicinal preparations containing organic active ingredients
  • C07K 14/335 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from bacteria from Lactobacillus (G)
  • C07K 14/245 - Escherichia (G)
  • A61K 39/395 - AntibodiesImmunoglobulinsImmune serum, e.g. antilymphocytic serum
  • C07K 14/535 - Granulocyte CSFGranulocyte-macrophage CSF
  • C07K 14/55 - IL-2
  • A61K 48/00 - Medicinal preparations containing genetic material which is inserted into cells of the living body to treat genetic diseasesGene therapy
  • A61K 38/19 - CytokinesLymphokinesInterferons
  • C12P 21/02 - Preparation of peptides or proteins having a known sequence of two or more amino acids, e.g. glutathione
  • A61K 39/00 - Medicinal preparations containing antigens or antibodies

83.

ENGINEERED BACTERIA EXPRESSING RACEMASE FOR TREATING DISEASES ASSOCIATED WITH HYPERAMMONEMIA

      
Application Number US2018058989
Publication Number 2019/090101
Status In Force
Filing Date 2018-11-02
Publication Date 2019-05-09
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Millet, Yves
  • Isabella, Vincent M.
  • Kotula, Jonathan W.
  • Miller, Paul F.
  • Falb, Dean

Abstract

Disclosed herein are bacteria engineered to treat diseases associated with hyperammonemia and methods of use thereof. Specifically, the bacteria are engineered to comprise a racemase to enable the detection of non-naturally occurring metabolites as an indication that the engineered bacteria are effectively converting ammonia.

IPC Classes  ?

  • A61K 48/00 - Medicinal preparations containing genetic material which is inserted into cells of the living body to treat genetic diseasesGene therapy
  • C12N 9/90 - Isomerases (5.)
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • A61P 3/00 - Drugs for disorders of the metabolism
  • A61K 35/74 - Bacteria

84.

MICROORGANISMS PROGRAMMED TO PRODUCE IMMUNE MODULATORS AND ANTI-CANCER THERAPEUTICS IN TUMOR CELLS

      
Application Number US2018041705
Publication Number 2019/014391
Status In Force
Filing Date 2018-07-11
Publication Date 2019-01-17
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Fisher, Adam
  • Li, Ning
  • Lora, Jose, M.

Abstract

Genetically programmed microorganisms, such as bacteria or virus, pharmaceutical compositions thereof, and methods of modulating and treating cancers are disclosed.

IPC Classes  ?

  • A61K 35/74 - Bacteria
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli
  • C12N 15/74 - Vectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora

85.

BACTERIA ENGINEERED TO TREAT METABOLIC DISEASES

      
Application Number 16069266
Status Pending
Filing Date 2016-12-28
First Publication Date 2019-01-10
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Falb, Dean
  • Isabella, Vincent M.
  • Kotula, Jonathan W.
  • Miller, Paul F.
  • Millet, Yves
  • Fisher, Adam B.
  • Rowe, Sarah Elizabeth
  • Tucker, Alex

Abstract

Genetically engineered bacteria, pharmaceutical compositions thereof, and methods of attenuating metabolic diseases are disclosed.

IPC Classes  ?

  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli
  • A61K 31/19 - Carboxylic acids, e.g. valproic acid
  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • C12N 9/02 - Oxidoreductases (1.), e.g. luciferase
  • A61K 38/44 - Oxidoreductases (1)
  • A61K 38/26 - Glucagons
  • A61K 38/20 - Interleukins
  • A61K 35/741 - Probiotics
  • A61K 31/198 - Alpha-amino acids, e.g. alanine or edetic acid [EDTA]
  • A61K 35/00 - Medicinal preparations containing materials or reaction products thereof with undetermined constitution

86.

BACTERIA FOR THE TREATMENT OF DISORDERS

      
Application Number US2018038840
Publication Number 2018/237198
Status In Force
Filing Date 2018-06-21
Publication Date 2018-12-27
Owner
  • SYNLOGIC OPERATING COMPANY, INC. (USA)
  • SYNLOGIC, INC. (USA)
Inventor
  • Falb, Dean
  • Fisher, Adam B.
  • Isabella, Vincent M.
  • Kotula, Jonathan W.
  • Lubkowicz, David
  • Miller, Paul F.
  • Millet, Yves
  • Rowe, Sarah Elizabeth

Abstract

Modified probiotics, pharmaceutical compositions thereof, and methods of modulating and treating disorders are disclosed.

IPC Classes  ?

  • C07K 14/245 - Escherichia (G)
  • A61K 35/74 - Bacteria
  • C12N 9/06 - Oxidoreductases (1.), e.g. luciferase acting on nitrogen containing compounds as donors (1.4, 1.5, 1.7)
  • C12N 9/88 - Lyases (4.)
  • C07K 14/005 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from viruses

87.

Bacteria engineered to treat disorders in which oxalate is detrimental

      
Application Number 15755836
Grant Number 11273184
Status In Force
Filing Date 2016-08-31
First Publication Date 2018-11-15
Grant Date 2022-03-15
Owner Synlogic Operating Company, Inc. (USA)
Inventor
  • Isabella, Vincent
  • Falb, Dean
  • Anderson, Cami Leigh
  • Miller, Paul
  • Millet, Yves
  • Kotula, Jonathan

Abstract

The present invention provides recombinant bacterial cells comprising at least one heterologous gene encoding at least one oxalate catabolism enzyme. In another aspect, the recombinant bacterial cells further comprise at least one heterologous gene encoding an importer of oxalate. The invention further provides pharmaceutical compositions comprising the recombinant bacteria, and methods for treating disorders in which oxalate is detrimental, such as hyperoxaluria, using the pharmaceutical compositions of the invention.

IPC Classes  ?

  • A61K 35/74 - Bacteria
  • C07K 14/195 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from bacteria
  • C12N 1/00 - Microorganisms, e.g. protozoaCompositions thereofProcesses of propagating, maintaining or preserving microorganisms or compositions thereofProcesses of preparing or isolating a composition containing a microorganismCulture media therefor
  • A61P 3/00 - Drugs for disorders of the metabolism
  • C12N 15/52 - Genes encoding for enzymes or proenzymes
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli

88.

Bacteria engineered to reduce hyperphenylalaninemia

      
Application Number 15775936
Grant Number 11618894
Status In Force
Filing Date 2016-11-16
First Publication Date 2018-11-08
Grant Date 2023-04-04
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Falb, Dean
  • Isabella, Vincent M.
  • Kotula, Jonathan W.
  • Miller, Paul F.
  • Rowe, Sarah
  • Millet, Yves

Abstract

Genetically engineered bacteria, pharmaceutical compositions thereof, and methods of modulating and treating diseases associated with hyperphenylalaninemia are disclosed.

IPC Classes  ?

  • C12N 9/22 - Ribonucleases
  • C12N 9/88 - Lyases (4.)
  • A61K 35/74 - Bacteria
  • A61P 7/00 - Drugs for disorders of the blood or the extracellular fluid
  • A61K 35/741 - Probiotics
  • C12N 9/78 - Hydrolases (3.) acting on carbon to nitrogen bonds other than peptide bonds (3.5)
  • C12Q 1/527 - Measuring or testing processes involving enzymes, nucleic acids or microorganismsCompositions thereforProcesses of preparing such compositions involving lyase

89.

Bacteria engineered to treat diseases that benefit from reduced gut inflammation and/or tightened gut mucosal barrier

      
Application Number 15772289
Grant Number 11685925
Status In Force
Filing Date 2016-09-08
First Publication Date 2018-11-01
Grant Date 2023-06-27
Owner Synlogic Operating Company, Inc. (USA)
Inventor
  • Falb, Dean
  • Isabella, Vincent M.
  • Kotula, Jonathan W.
  • Miller, Paul F.
  • Millet, Yves
  • Fisher, Adam

Abstract

Genetically engineered bacteria, pharmaceutical compositions thereof, and methods of treating or preventing autoimmune disorders, inhibiting inflammatory mechanisms in the gut, and/or tightening gut mucosal barrier function are disclosed.

IPC Classes  ?

  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli
  • A61K 35/74 - Bacteria
  • C12N 9/02 - Oxidoreductases (1.), e.g. luciferase
  • C12N 9/12 - Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
  • A61K 38/20 - Interleukins
  • A61K 38/44 - Oxidoreductases (1)
  • A61K 35/741 - Probiotics
  • A61K 38/26 - Glucagons
  • A61K 31/19 - Carboxylic acids, e.g. valproic acid
  • A61K 31/198 - Alpha-amino acids, e.g. alanine or edetic acid [EDTA]
  • A61K 35/00 - Medicinal preparations containing materials or reaction products thereof with undetermined constitution

90.

Bacteria engineered to treat a disease or disorder

      
Application Number 15852762
Grant Number 10933102
Status In Force
Filing Date 2017-12-22
First Publication Date 2018-10-04
Grant Date 2021-03-02
Owner Synlogic Operating Company, Inc. (USA)
Inventor
  • Falb, Dean
  • Miller, Paul F.
  • Kotula, Jonathan W.
  • Isabella, Vincent M.
  • Machinani, Suman
  • Fisher, Adam B.
  • Millet, Yves

Abstract

Genetically programmed microorganisms, such as bacteria, pharmaceutical compositions thereof, and methods of modulating and treating a disease and/or disorder are disclosed.

IPC Classes  ?

  • A61K 35/74 - Bacteria
  • A61K 39/02 - Bacterial antigens
  • C12N 9/88 - Lyases (4.)
  • C12N 9/06 - Oxidoreductases (1.), e.g. luciferase acting on nitrogen containing compounds as donors (1.4, 1.5, 1.7)
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli
  • C07K 14/245 - Escherichia (G)
  • A61K 35/741 - Probiotics
  • C07K 14/195 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from bacteria
  • A61K 38/00 - Medicinal preparations containing peptides
  • A61K 35/00 - Medicinal preparations containing materials or reaction products thereof with undetermined constitution

91.

MICROORGANISMS PROGRAMMED TO PRODUCE IMMUNE MODULATORS AND ANTI-CANCER THERAPEUTICS IN TUMOR CELLS

      
Application Number US2018012698
Publication Number 2018/129404
Status In Force
Filing Date 2018-01-05
Publication Date 2018-07-12
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Falb, Dean
  • Kotula, Jonathan, W.
  • Isabella, Vincent, M.
  • Miller, Paul, F.
  • Machinani, Suman
  • Saha, Saurabh
  • Fisher, Adam
  • Millet, Yves
  • Li, Ning
  • Lora, Jose, M.

Abstract

Genetically programmed microorganisms, such as bacteria or virus, pharmaceutical compositions thereof, and methods of modulating and treating cancers are disclosed.

IPC Classes  ?

  • A61K 35/74 - Bacteria
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli
  • C12N 15/74 - Vectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora

92.

Bacteria engineered to reduce hyperphenylalaninemia

      
Application Number 15301324
Grant Number 10195234
Status In Force
Filing Date 2016-05-13
First Publication Date 2017-11-02
Grant Date 2019-02-05
Owner Synlogic Operating Company, Inc. (USA)
Inventor
  • Falb, Dean
  • Isabella, Vincent M.
  • Kotula, Jonathan W.
  • Miller, Paul F.
  • Rowe, Sarah
  • Millet, Yves

Abstract

Genetically engineered bacteria, pharmaceutical compositions thereof, and methods of modulating and treating diseases associated with hyperphenylalaninemia are disclosed.

IPC Classes  ?

  • A61K 35/74 - Bacteria
  • C07K 14/245 - Escherichia (G)
  • C12N 9/88 - Lyases (4.)
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli
  • C12N 9/06 - Oxidoreductases (1.), e.g. luciferase acting on nitrogen containing compounds as donors (1.4, 1.5, 1.7)
  • A61K 35/741 - Probiotics
  • C07K 14/195 - Peptides having more than 20 amino acidsGastrinsSomatostatinsMelanotropinsDerivatives thereof from bacteria
  • A61K 39/02 - Bacterial antigens
  • A61K 35/00 - Medicinal preparations containing materials or reaction products thereof with undetermined constitution
  • A61K 38/00 - Medicinal preparations containing peptides

93.

BACTERIA ENGINEERED TO TREAT DISEASES ASSOCIATED WITH HYPERAMMONEMIA

      
Application Number US2017017552
Publication Number 2017/139697
Status In Force
Filing Date 2017-02-10
Publication Date 2017-08-17
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Kotula, Jonathan W.
  • Isabella, Vincent M.
  • Miller, Paul F.
  • Falb, Dean
  • Li, Ning
  • Machinani, Suman

Abstract

Genetically engineered bacteria, pharmaceutical compositions thereof, and methods of modulating and treating disorders associated with hyperammonemia are disclosed.

IPC Classes  ?

  • C12N 1/00 - Microorganisms, e.g. protozoaCompositions thereofProcesses of propagating, maintaining or preserving microorganisms or compositions thereofProcesses of preparing or isolating a composition containing a microorganismCulture media therefor
  • A61K 35/74 - Bacteria
  • C12N 1/20 - BacteriaCulture media therefor
  • A61K 35/741 - Probiotics

94.

BACTERIA ENGINEERED TO TREAT NONALCOHOLIC STEATOHEPATITIS (NASH)

      
Application Number US2017017563
Publication Number 2017/139708
Status In Force
Filing Date 2017-02-10
Publication Date 2017-08-17
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Miller, Paul, F.
  • Isabella, Vincent, M.
  • Falb, Dean
  • Kotula, Jonathan, W.
  • Machinani, Suman
  • Millet, Yves
  • Fisher, Adam, B.
  • Li, Ning
  • Tucker, Alex

Abstract

The present disclosure provides engineered bacterial cells comprising a heterologous gene encoding a propionate biosynthesis gene cassette; a butyrate biosynthesis gene cassette; GLP-1; a propionate biosynthesis gene cassette and a butyrate biosynthesis gene cassette; a propionate biosynthesis gene cassette and GLP-1; a butyrate biosynthesis gene cassette and GLP-1; or a propionate biosynthesis gene cassette, a butyrate biosynthesis gene cassette, and GLP-1. In another aspect, the engineered bacterial cells further comprise a bacterial kill switch. The disclosure further provides pharmaceutical compositions comprising the engineered bacteria, and methods for treating liver disease, such as nonalcoholic steatohepatitis (NASH), using the pharmaceutical compositions of the disclosure.

IPC Classes  ?

  • C12N 1/00 - Microorganisms, e.g. protozoaCompositions thereofProcesses of propagating, maintaining or preserving microorganisms or compositions thereofProcesses of preparing or isolating a composition containing a microorganismCulture media therefor
  • A61K 35/741 - Probiotics

95.

BACTERIA ENGINEERED TO TREAT DISEASES THAT BENEFIT FROM REDUCED GUT INFLAMMATION AND/OR TIGHTENED GUT MUCOSAL BARRIER

      
Application Number US2017016603
Publication Number 2017/136792
Status In Force
Filing Date 2017-02-03
Publication Date 2017-08-10
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Miller, Paul, F.
  • Isabella, Vincent, M.
  • Kotula, Jonathan, W.
  • Falb, Dean
  • Fisher, Adam, B.
  • Millet, Yves
  • Li, Ning

Abstract

Genetically engineered bacteria, pharmaceutical compositions thereof, and methods of treating or preventing autoimmune disorders, inhibiting inflammatory mechanisms in the gut, and/or tightening gut mucosal barrier function are disclosed.

IPC Classes  ?

  • A61K 35/74 - Bacteria
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli
  • C12N 15/74 - Vectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora
  • C12P 7/52 - Propionic acidButyric acids

96.

BACTERIA ENGINEERED TO TREAT DISEASES ASSOCIATED WITH TRYPTOPHAN METABOLISM

      
Application Number US2017016609
Publication Number 2017/136795
Status In Force
Filing Date 2017-02-03
Publication Date 2017-08-10
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Falb, Dean
  • Miller, Paul, F.
  • Kotula, Jonathan, W.
  • Isabella, Vincent, M.
  • Fisher, Adam, B.
  • Millet, Yves
  • Lora, Jose, M.

Abstract

Genetically engineered bacteria, pharmaceutical compositions thereof, and methods of modulating and treating disorders associated with dysregulated tryptophan metabolism are disclosed.

IPC Classes  ?

97.

BACTERIA ENGINEERED TO TREAT DISORDERS ASSOCIATED WITH BILE SALTS

      
Application Number US2017012946
Publication Number 2017/123592
Status In Force
Filing Date 2017-01-11
Publication Date 2017-07-20
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Falb, Dean
  • Kotula, Jonathan, W.
  • Isabella, Vincent, M.
  • Miller, Paul, F.
  • Tucker, Alex

Abstract

The present disclosure provides recombinant bacterial cells comprising a heterologous gene encoding a bile salt hydrolase enzyme and/or a 7α-dehydroxylating enzyme. In another aspect, the recombinant bacterial cells further comprise a bacterial kill switch. The disclosure further provides pharmaceutical compositions comprising the recombinant bacteria, and methods for treating disorders associated with bile salts, such as cardiovascular disease, metabolic disease, liver disease (such as cirrhosis or nonalcoholic steatohepatitis (NASH), C. difficile infection, and cancer, using the pharmaceutical compositions of the disclosure.

IPC Classes  ?

  • C12N 1/21 - BacteriaCulture media therefor modified by introduction of foreign genetic material
  • A61K 35/741 - Probiotics
  • C12N 9/80 - Hydrolases (3.) acting on carbon to nitrogen bonds other than peptide bonds (3.5) acting on amide bonds in linear amides

98.

BACTERIA ENGINEERED TO TREAT METABOLIC DISEASES

      
Application Number US2016069052
Publication Number 2017/123418
Status In Force
Filing Date 2016-12-28
Publication Date 2017-07-20
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Falb, Dean
  • Isabella, Vincent, M.
  • Kotula, Jonathan, W.
  • Miller, Paul, F.
  • Millet, Yves
  • Fisher, Adam, B.
  • Rowe, Sarah, Elizabeth
  • Tucker, Alex

Abstract

Genetically engineered bacteria, pharmaceutical compositions thereof, and methods of attenuating metabolic diseases are disclosed.

IPC Classes  ?

  • A61K 35/74 - Bacteria
  • C12N 1/00 - Microorganisms, e.g. protozoaCompositions thereofProcesses of propagating, maintaining or preserving microorganisms or compositions thereofProcesses of preparing or isolating a composition containing a microorganismCulture media therefor
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli
  • C12N 15/74 - Vectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora

99.

BACTERIA ENGINEERED TO DETOXIFY DELETERIOUS MOLECULES

      
Application Number US2017012982
Publication Number 2017/123610
Status In Force
Filing Date 2017-01-11
Publication Date 2017-07-20
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Falb, Dean
  • Kotula, Jonathan W.
  • Isabella, Vincent M.
  • Miller, Paul F.
  • Fisher, Adam B.
  • Millet, Yves
  • Machinani, Suman

Abstract

Genetically engineered bacteria, pharmaceutical compositions thereof, and methods of detoxifying deleterious molecules are disclosed.

IPC Classes  ?

  • C12N 1/21 - BacteriaCulture media therefor modified by introduction of foreign genetic material
  • A61K 35/741 - Probiotics

100.

MICROORGANISMS PROGRAMMED TO PRODUCE IMMUNE MODULATORS AND ANTI-CANCER THERAPEUTICS IN TUMOR CELLS

      
Application Number US2017013072
Publication Number 2017/123675
Status In Force
Filing Date 2017-01-11
Publication Date 2017-07-20
Owner SYNLOGIC OPERATING COMPANY, INC. (USA)
Inventor
  • Falb, Dean
  • Kotula, Jonathan, W.
  • Isabella, Vincent, M.
  • Miller, Paul, F.
  • Machinani, Suman
  • Saha, Saurabh
  • Fisher, Adam, B.
  • Millet, Yves
  • Li, Ning

Abstract

Genetically programmed microorganisms, such as bacteria or virus, pharmaceutical compositions thereof, and methods of modulating and treating cancers are disclosed.

IPC Classes  ?

  • A61K 35/74 - Bacteria
  • C12N 15/70 - Vectors or expression systems specially adapted for E. coli
  • C12N 15/74 - Vectors or expression systems specially adapted for prokaryotic hosts other than E. coli, e.g. Lactobacillus, Micromonospora
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